BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF09RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1573 1413 0.0
3x_Contig1791 184 2e-46
3x_Contig1782 182 8e-46
3x_Contig1240 167 5e-41
3x_Contig563 155 2e-37
3x_Contig1772 147 5e-35
>3x_Contig1573
Length = 10819
Score = 1413 bits (713), Expect = 0.0
Identities = 807/829 (97%), Gaps = 7/829 (0%)
Strand = Plus / Plus
Query: 41 gcttgtttcttctagattattctatattagcagatgtgccactctaattcagcatataag 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6660 gcttgtttcttctagattattctatattagcagatgtgccactctaattcagcatataag 6719
Query: 101 tgtcactccaattatgagaccaaagttctgagttactgctgctttcaaaagtataccgtt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6720 tgtcactccaattatgagaccaaagttctgagttactgctgctttcaaaagtataccgtt 6779
Query: 161 aagccttcattcttgttccggttcttctttctaaatgttcgatttgttttcatcttgaag 220
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 6780 aagccttcattcttgttccggttcttctttctaaatgttcgatttgttttcagcg-gaag 6838
Query: 221 acaagggaaatatacaagtcacgtgttatgtagataagccaacccatatatatatatata 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6839 acaagggaaatatacaagtcacgtgttatgtagataagccaacccatatatatatatata 6898
Query: 281 agaagaagaaggtatcaagagaccaggagaacgatgcaggaaacaatgcagagcggtgcc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6899 agaagaagaaggtatcaagagaccaggagaacgatgcaggaaacaatgcagagcggtgcc 6958
Query: 341 agggtgactgtggataaatacggcaagaatagtaccagtcttggtagtcacacgttgata 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6959 agggtgactgtggataaatacggcaagaatagtaccagtcttggtagtcacacgttgata 7018
Query: 401 agatgtaaatggaaaaaaatggaatgaaaaacaaatgatttcgcccaggatcgaactggg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7019 agatgtaaatggaaaaaaatggaatgaaaaacaaatgatttcgcccaggatcgaactggg 7078
Query: 461 gacgttctgcgtgttaagcagatgccataaccgactagaccacgaaaccaacttgttgtg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7079 gacgttctgcgtgttaagcagatgccataaccgactagaccacgaaaccaacttgttgtg 7138
Query: 521 aatccaggattcatctttggtatgcaccatgaaggcgaaatcatgtggaaaggttatata 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7139 aatccaggattcatctttggtatgcaccatgaaggcgaaatcatgtggaaaggttatata 7198
Query: 581 ccactactctgtaatatgtatgtggttagattatatatatattgtcaggcgcacaatgac 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7199 ccactactctgtaatatgtatgtggttagattatatatatattgtcaggcgcacaatgac 7258
Query: 641 atttagaaacagaatgtccaagtatctgcttttatgttgattcagtaattcttacttgtc 700
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 7259 atttagaaacagaatgtccaggtatctgcttttatgttgattcagtaattctaacttgtc 7318
Query: 701 gtatttacaagtgtatgatgcatgctgttt-aatgtatctagtagatatcctatttactt 759
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7319 gtatttacaagtgtatgatgcatgctgtttaaatgtatctagtagatatcctatttactc 7378
Query: 760 ccattactgtgaccatgaaatgttttttcgcacccgcattggaaaaaaccttttttaatt 819
|||| ||||||||||||||||||| || |||| ||||||||| ||||||||| |||| |
Sbjct: 7379 ccataactgtgaccatgaaatgttcttccgca-ccgcattgg-aaaaaccttctttatat 7436
Query: 820 ttaccccatattctaattttcttcttgcgttcaatgcttgcttttgcag 868
|| |||||||||| | | ||||| |||||||||||| |||||||||||
Sbjct: 7437 ttcacccatattctca-tctcttc-tgcgttcaatgc-tgcttttgcag 7482
>3x_Contig1791
Length = 39945
Score = 184 bits (93), Expect = 2e-46
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 427 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16741 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 16682
Query: 487 ataaccgactagaccacgaaaccaacttgttgt 519
|||||||||||||||||||||||||||||||||
Sbjct: 16681 ataaccgactagaccacgaaaccaacttgttgt 16649
>3x_Contig1782
Length = 24703
Score = 182 bits (92), Expect = 8e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 427 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24344 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 24285
Query: 487 ataaccgactagaccacgaaaccaacttgttg 518
||||||||||||||||||||||||||||||||
Sbjct: 24284 ataaccgactagaccacgaaaccaacttgttg 24253
>3x_Contig1240
Length = 5468
Score = 167 bits (84), Expect = 5e-41
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 427 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 1038
Query: 487 ataaccgactagaccacgaaacca 510
||||||||||||||||||||||||
Sbjct: 1037 ataaccgactagaccacgaaacca 1014
>3x_Contig563
Length = 1285
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 433 aaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataacc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataacc 628
Query: 493 gactagaccacgaaacca 510
||||||||||||||||||
Sbjct: 627 gactagaccacgaaacca 610
>3x_Contig1772
Length = 25851
Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 436 tgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataaccgac 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11780 tgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataaccgac 11839
Query: 496 tagaccacgaaacc 509
||||||||||||||
Sbjct: 11840 tagaccacgaaacc 11853
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,220
Number of Sequences: 1807
Number of extensions: 14220
Number of successful extensions: 1054
Number of sequences better than 1.0e-20: 6
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)