BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZF11FM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1188                                                        1350   0.0  

>3x_Contig1188 
          Length = 4443

 Score = 1350 bits (681), Expect = 0.0
 Identities = 746/765 (97%), Gaps = 3/765 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3672 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 3731

                                                                        
Query: 146  aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 3791

                                                                        
Query: 206  ttctaagttccaatataaagtaagaatcattaactgaaaacagacacttcttgtttgttt 265
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3792 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 3851

                                                                        
Query: 266  taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3852 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 3911

                                                                        
Query: 326  atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3912 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 3971

                                                                        
Query: 386  agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3972 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 4031

                                                                        
Query: 446  gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4032 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 4091

                                                                        
Query: 506  ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 4151

                                                                        
Query: 566  cggtaagtatatcattctttaaggggtggttctgtgcattctntccttaaatctgagtnt 625
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 4152 cggtaagtatatcattctttaaggggtggttctgtgcattctttccttaaatctgagttt 4211

                                                                        
Query: 626  tccctttattttattttntatttttnttgaaggctgcagaaggactacgtcaaattcatt 685
            ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 4212 tccctttattttattttttattttttttgaatgctgcagaaggactacgtcaaattcatt 4271

                                                                        
Query: 686  atatttatcaataaggttcctatatccatagctttcacaataaaagagagtgggtatatg 745
            ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4272 ataattatcaataaggttcctatatccatagctttcacaataaaagagagtgtgtatatg 4331

                                                                        
Query: 746  tatgtatgcatttgactagt-taaatatgtatatatatatatatatatatttaggacaat 804
            |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| 
Sbjct: 4332 tatgtatgca-ttgactagtataaatatatatatatatatatatatatatttaggacaa- 4389

                                                         
Query: 805  ttcgtgagtttcaaatctattcgctggttaagattttgggtcact 849
            ||||||||||  || ||||||||||| | |||||| || ||||||
Sbjct: 4390 ttcgtgagttcgaagtctattcgctgttcaagattctgtgtcact 4434


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,780
Number of Sequences: 1807
Number of extensions: 13780
Number of successful extensions: 2417
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)