BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF12FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1388 0.0
3x_Contig1025 289 5e-78
>3x_Contig1337
Length = 7771
Score = 1388 bits (700), Expect = 0.0
Identities = 767/783 (97%), Gaps = 5/783 (0%)
Strand = Plus / Minus
Query: 86 tatataaactttgtatagtaatatatatatatttacaatgaattgggaaaaaaatgaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3225 tatataaactttgtatagtaatatatatatatttacaatgaattgggaaaaaaatgaaaa 3166
Query: 146 agattacggcttggcaaatagcgccgctggggcatagtagtaaaagtttaaattccaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 agattacggcttggcaaatagcgccgctggggcatagtagtaaaagtttaaattccaaat 3106
Query: 206 caatttgaaatcttttatataacggtgagtagtcccacggtttcccgtgcctttgaaaac 265
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3105 caatttgaaatccgttatataacggtgagtagtcccacggtttcccgtgcctttgaaaac 3046
Query: 266 ctgtgtttctgtgtggctggtaacgtcagcattacgcacggcgatttcattggacggcag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3045 ctgtgtttctgtgtggctggtaacgtcagcattacgcacggcgatttcattggacggcag 2986
Query: 326 aggaaaaaaagaagaaaatttagtgtcacgtggggatgggaagcacgtgacagaaagtca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2985 aggaaaaaaagaagaaaatttagtgtcacgtggggatgggaagcacgtgacagaaagtca 2926
Query: 386 cgtggtttgtcatatatgtaacaacaataccaagatgtcttcgacatcttggtattgctc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2925 cgtggtttgtcatatatgtaacaacaataccaagatgtcttcgacatcttggtattgctc 2866
Query: 446 taatacattgatcaacagatgcccgaatggcctatttgtgaagaaaaaaaattatattac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2865 taatacattgatcaacagatgcccgaatggcctatttgtgaagaaaaaaaattatattac 2806
Query: 506 acacgttatacccagataagattttaatttacatatggatcctttgcaggatgatgatga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2805 acacgttatacccagataagattttaatttacatatggatcctttgcaggatgatgatga 2746
Query: 566 tgataatgataatgacaactcgcctaccgtttaagcttgagtagaagaagagtacttggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2745 tgataatgataatgacaactcgcctaccgtttaagcttgagtagaagaagagtacttggt 2686
Query: 626 aacagctctggtaccttcagaaacagcgtgcttggccaattcacctgncaagatcaatct 685
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2685 aacagctctggtaccttcagaaacagcgtgcttggccaattcacctggcaagatcaatct 2626
Query: 686 gacagctgttttggatttctctagcagaaatagtagatttccttgttgttagcagccaac 745
|||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 2625 gacagctg-tttggatttctctagcagaaatagtagattt-cttgttgtaagcagccaac 2568
Query: 746 ttggaagattcagtagcgatttctttcaaagatttcggtaacgaaagatttcaagatgga 805
||||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||
Sbjct: 2567 ttggaagattcagtagcga-ttctttcaaagatatcgttaacgaaagagttcaagatgga 2509
Query: 806 cctatacttttgggaaataccagggtctggaatgggtttggcttcaaaaccttgtaaatg 865
| || |||||||||||||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 2508 catagacttttgggaaataccagtgtctgg-atgggttt-gcttcaaaaccttgtagatg 2451
Query: 866 taa 868
|||
Sbjct: 2450 taa 2448
>3x_Contig1025
Length = 2581
Score = 289 bits (146), Expect = 5e-78
Identities = 259/289 (89%), Gaps = 6/289 (2%)
Strand = Plus / Plus
Query: 594 gtttaagcttgagtagaagaagagtacttggtaacagctctggtaccttcagaaacagcg 653
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 327 gtttaagcttgagtggaggaagagtacttggtaacagctctagtaccttcagaaacagcg 386
Query: 654 tgcttggccaattcacctgncaagatcaatctgacagctgttttggatttctctagcaga 713
||||| ||||||||||||| |||||||||||| ||||| | |||| ||||||||||||||
Sbjct: 387 tgcttagccaattcacctggcaagatcaatctaacagcag-tttgaatttctctagcaga 445
Query: 714 aatagtagatttccttgttgttagcagccaacttggaagattcagtagcgatttctttca 773
|| ||||| || |||||||| ||||||||||||||| ||||| ||||| | ||||||||
Sbjct: 446 gatggtagactt-cttgttgtaagcagccaacttggacgattcggtagc-aattctttca 503
Query: 774 aagatttcggtaacgaaagatttcaagatggacctatacttttgggaaataccagggtct 833
||||| ||| |||||||||| |||||||| ||| || |||||||||||||||||| ||||
Sbjct: 504 aagatatcgttaacgaaagagttcaagatagacatagacttttgggaaataccagtgtct 563
Query: 834 ggaatgggtttggcttcaaaaccttgtaaatgtaaagaagagttagttt 882
|| |||||||| |||||||||||||||| |||| ||||||||| |||||
Sbjct: 564 gg-atgggttt-gcttcaaaaccttgtagatgt-aagaagagtaagttt 609
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,467
Number of Sequences: 1807
Number of extensions: 12467
Number of successful extensions: 325
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)