BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF12RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 767 0.0
>3x_Contig1310
Length = 7790
Score = 767 bits (387), Expect = 0.0
Identities = 440/456 (96%), Gaps = 2/456 (0%)
Strand = Plus / Minus
Query: 422 acatatactttattcaaaactcatgtatttctaacatttgcactacataaacatttgata 481
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 7790 acatatactttattcaaaactcatgtatttctaacatntgcactacataaacatntgata 7731
Query: 482 gacactaaaagccaatcttttacccccttagtacagcttttaaatgctagtatactaagc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 gacactaaaagccaatcttttacccccttagtacagcttttaaatgctagtatactaagc 7671
Query: 542 gagagtttttaaaggtcgcgatttactccagttcgtcttgaaccctttgctgattcaaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 gagagtttttaaaggtcgcgatttactccagttcgtcttgaaccctttgctgattcaaaa 7611
Query: 602 taaatcatcaacactttttgaatgttntccccagatataaagaaaatgacaaacaagatt 661
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7610 taaatcatcaacactttttgaatgttttccccagatataaagaaaatgacaaacaagatt 7551
Query: 662 taagaacttcgtttgaattatccaaattaacttcttatataccggaaacggtacatatca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 taagaacttcgtttgaattatccaaattaacttcttatataccggaaacggtacatatca 7491
Query: 722 cctggctgagacattcgctactcaagactcttatactgagttattcagcctttcagatat 781
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7490 cctggctgagacattcgctactcaagactctaatactgagttattcagcctttcagatat 7431
Query: 782 cgctggtttcgatcgcttttcttaattttgga-gaaaacaaggtattcaacaaggattaa 840
||||| |||||||||||||||| ||||||||| || | || |||||||||||||| | |
Sbjct: 7430 cgctgttttcgatcgcttttct-aattttggaagagaccagggtattcaacaaggtatta 7372
Query: 841 ttcctcgaccggaactattttttttaagacctaagt 876
|||||||||||||||||||| || ||||| ||||||
Sbjct: 7371 ttcctcgaccggaactatttattataagaactaagt 7336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7111
Number of Sequences: 1807
Number of extensions: 7111
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)