BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG01FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1257 0.0
>3x_Contig1765
Length = 24733
Score = 1257 bits (634), Expect = 0.0
Identities = 755/789 (95%), Gaps = 5/789 (0%)
Strand = Plus / Plus
Query: 89 agatgtgatcatgaacaagcaacctgaacattccaaattttataacgagattttgaatca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 agatgtgatcatgaacaagcaacctgaacattccaaattttataacgagattttgaatca 11034
Query: 149 atgggaacatgatgggttcaaatacggagatgatttgtccgtggtcgtcagtcagtacac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11035 atgggaacatgatgggttcaaatacggagatgatttgtccgtggtcgtcagtcagtacac 11094
Query: 209 tttttcatgttgggatccaacgaaaccccatttcagattggtgcttttgccttcggcaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11095 tttttcatgttgggatccaacgaaaccccatttcagattggtgcttttgccttcggcaga 11154
Query: 269 tgataagaagggagcgaggggattcaaggatattctttacatcacgaaccatgttacaag 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11155 tgataagaagggagcgaggggattcaaggatattctttacatcacgaaccatgttacaag 11214
Query: 329 tgatggtacttccggagctaatttattggaagacttatcgatcgaattgggtaaattttc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11215 tgatggtacttccggagctaatttattggaagacttatcgatcgaattgggtaaattttc 11274
Query: 389 tggaaccaatttgcaacagttagagtatcttttacattatggaagagactacgagcaatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11275 tggaaccaatttgcaacagttagagtatcttttacattatggaagagactacgagcaatt 11334
Query: 449 gccgaagttaccagacccaatcgaagaaaaagtatcttatggtgtcaatccatcgtttat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11335 gccgaagttaccagacccaatcgaagaaaaagtatcttatggtgtcaatccatcgtttat 11394
Query: 509 tgcatctttcctcttgagtcaaatgggaaagaaattgttgaccaagaaatgggaccaacc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11395 tgcatctttcctcttgagtcaaatgggaaagaaattgttgaccaagaaatgggaccaacc 11454
Query: 569 catcactcgtnctatcgatgcgtcacccgctagtcacatggctcacattattaagattga 628
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11455 catcactcgtcctatcgatgcgtcacccgctagtcacatggctcacattatcaagattga 11514
Query: 629 ccccaca-gtatgcagaagatgagagctagagtgaaagacaagttgaatgtttaaagcta 687
||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 11515 cccaacaggtatgcagaagatgagagctagagtgaaggacaagttgaatg-gtaaagcta 11573
Query: 688 cgttaacgccctttatgcaagcgtgcttggtttgttaattgctatgaagcttgggtggtt 747
||||||||||||| |||||||||||| |||||||||| ||||||||||||| || || ||
Sbjct: 11574 cgttaacgcccttcatgcaagcgtgc-tggtttgttagttgctatgaagctgggttgttt 11632
Query: 748 gaccattgaaaatggaacaaattttttattaacatggcagtttctttgaacactaaacat 807
||| || ||||||||||| ||||||| || |||||||||||| || ||||||||| |||
Sbjct: 11633 gacgatagaaaatggaacgaatttttcatcaacatggcagttcctatgaacactagacaa 11692
Query: 808 tat-ttcctgaagaacccgaattaggaaatcgttttaaatatgggcccgttggtaggagg 866
||| | |||||||| |||||| || || ||||||||| |||||| ||||| ||||||||
Sbjct: 11693 tatctacctgaagatcccgaagtaagagatcgttttagatatggtaccgtt-gtaggagg 11751
Query: 867 gtccaattt 875
|||||||
Sbjct: 11752 taccaattt 11760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6679
Number of Sequences: 1807
Number of extensions: 6679
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)