BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZG01RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1321                                                        1011   0.0  

>3x_Contig1321 
          Length = 8217

 Score = 1011 bits (510), Expect = 0.0
 Identities = 615/641 (95%), Gaps = 8/641 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   tgttgctcgctctcgtcattatggctgttttctatgtataattggtttctggctagaagg 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4788 tgttgctcgctctcgtcattatggctgttttctatgtataattggtttctggctagaagg 4847

                                                                        
Query: 107  tcatccagcaattggaagattgatttctgtttcattgcatcaccagatttgtatatggtt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4848 tcatccagcaattggaagattgatttctgtttcattgcatcaccagatttgtatatggtt 4907

                                                                        
Query: 167  aaaccaccctggacctgttggcgtaagttcattaagacgactgacgattcaattcgggtg 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4908 aaaccaccctggacctgttggcgtaagttcattaagacgactgacgattcaattcgggtg 4967

                                                                        
Query: 227  attaaatggtcaaggaatgcaagaagatctgcttcggacgagtttttcataacggcctgt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 attaaatggtcaaggaatgcaagaagatctgcttcggacgagtttttcataacggcctgt 5027

                                                                        
Query: 287  ttggtattactatcaaaggtagtatatcgtccattggcagaattttccagcccgataaga 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5028 ttggtattactatcaaaggtagtatatcgtccattggcagaattttccagcccgataaga 5087

                                                                        
Query: 347  ccaccttggactgaggagaggacagtctccaatctattggacactgatctaatttggaat 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 ccaccttggactgaggagaggacagtctccaatctattggacactgatctaatttggaat 5147

                                                                        
Query: 407  agaaaatcatctgaaataacactgttattctgatcttgtgttgccaaagtgtgtctcgct 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 agaaaatcatctgaaataacactgttattctgatcttgtgttgccaaagtgtgtctcgct 5207

                                                                        
Query: 467  tgaagtgatttaggatatgctatggtggacagttctttagtttccaacccttttaacgtt 526
            |||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||
Sbjct: 5208 tgaagtgatttaggatatgctatggtgacaagttctttagtttccaaccctttcaacgtt 5267

                                                                        
Query: 527  tgttcaccaagcttgacgaacatccattctatagacgataatatggtggattttcttggt 586
            ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||   | ||
Sbjct: 5268 tgttcaccaagctcgacgaacatccatcctatagacgataatat-gtgtattt--ctcgt 5324

                                                                        
Query: 587  cctaaaattttacccccaatgtttttccccttagccttttgcgagcgggaattttatctt 646
             ||||||||| |||| ||||| | |||||| ||| ||||||||||| ||||| ||||| |
Sbjct: 5325 tctaaaatttcacccacaatg-tcttccccgtaggcttttgcgagc-ggaatattatc-t 5381

                                                     
Query: 647  tcagggacttgcttggtggtagctttaaaatctttttaaac 687
            |||| ||||||| |||||||||| |||||||||| ||||||
Sbjct: 5382 tcagtgacttgc-tggtggtagc-ttaaaatcttcttaaac 5420


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7076
Number of Sequences: 1807
Number of extensions: 7076
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)