BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG02FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 1172 0.0
>3x_Contig1544
Length = 10626
Score = 1172 bits (591), Expect = 0.0
Identities = 699/730 (95%), Gaps = 5/730 (0%)
Strand = Plus / Plus
Query: 87 attgtgtttagttttctatgaatgttagttagatatgtcagacttgtgttacaattagtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2710 attgtgtttagttttctatgaatgttagttagatatgtcagacttgtgttacaattagtt 2769
Query: 147 tagagatgtatttgaattgattgatgttatgaagagattagtgtaataagaacagagaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2770 tagagatgtatttgaattgattgatgttatgaagagattagtgtaataagaacagagaaa 2829
Query: 207 gaatttagaattatttatgtaaaaacaggcagatatgggattaccaaaatgaagtgaaat 266
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2830 gaatttagaattattaaggtaaaaacaggcagatatgggattaccaaaatgaagtgaaat 2889
Query: 267 gggtaaagagaaaaaaaggcattgtcatttactcgctttgagactctacgtcagtctcca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2890 gggtaaagagaaaaaaaggcattgtcatttactcgctttgagactctacgtcagtctcca 2949
Query: 327 cgtcagtttgcacctccgaatgcaaactcagtttgacgggtttcgtcagttttggcgagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2950 cgtcagtttgcacctccgaatgcaaactcagtttgacgggtttcgtcagttttggcgagc 3009
Query: 387 ccagggaagggcgaggaccctgtttagagtcactatcatcgcttggattactagttctat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3010 ccagggaagggcgaggaccctgtttagagtcactatcatcgcttggattactagttctat 3069
Query: 447 ctgaatcagtagtagtaatatcagaagcacttatcgtagcagcagacgtagaattattgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3070 ctgaatcagtagtagtaatatcagaagcacttatcgtagcagcagacgtagaattattgt 3129
Query: 507 taacgggagggggtgttggtgggggcaacgccaggtcaaagctttccgaaggtcttctct 566
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3130 taacgggagggggtgttggtgggggcaacgccaggtcaaagcttcccgaaggtcttctct 3189
Query: 567 tgtggggtgatgaaaaggacataagcgtttctatcgcttccacctctgatggttgcgaaa 626
|||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3190 tgtgtggtgatgaaagggacataagcgtctctatcgcttccacctctgatggttgcgaat 3249
Query: 627 ttgacgacgatgatgttctag-gatctttggatgggttgaggat-acgacctttgttttt 684
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 3250 ttgacgacgatgatgttctagtaatctttggatgggttgaggataacgacctttgttttt 3309
Query: 685 ttttgggactttgcaacgctttcaagaacgcttcctgggcagaattttacccggttaaat 744
| ||||||||||| |||||||||||||||||| |||| |||||||| | |||| |||||
Sbjct: 3310 tcttgggactttgtaacgctttcaagaacgctacctgcgcagaattctcaccggctaaat 3369
Query: 745 tttttaattattctttta--tttaaccccatcgttttgtgtgcccattacggactttgat 802
|| ||| | || |||| || ||||||||||| | ||||| ||| |||||||||||||
Sbjct: 3370 cttctaaatcatcctttagtttcaaccccatcgtatcgtgtg-ccaatacggactttgat 3428
Query: 803 gcatttctcg 812
||||||||||
Sbjct: 3429 gcatttctcg 3438
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7042
Number of Sequences: 1807
Number of extensions: 7042
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)