BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG02RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1244 1336 0.0
>3x_Contig1244
Length = 4689
Score = 1336 bits (674), Expect = 0.0
Identities = 752/774 (97%), Gaps = 3/774 (0%)
Strand = Plus / Minus
Query: 48 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 2135
Query: 108 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 2075
Query: 168 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgattaagagtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2074 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 2015
Query: 228 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 1955
Query: 288 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 1895
Query: 348 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 1835
Query: 408 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 1775
Query: 468 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 1715
Query: 528 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcactttattattaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1714 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcacttaattataaa 1655
Query: 588 gatctatagattcaattccaacataatattatcggaaccctttctgaacactccagtagt 647
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct: 1654 gatctatagattcaattccaacataatataatcggaa-ccttcttgaacactccagtagt 1596
Query: 648 ttgttagtctagtgacatctaacctgcctttttttttgtctcgaggtgttgcaatatcga 707
| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct: 1595 tgtttagtctagtgacatctaacctgcc-ttttctttgtctcgatgtgttgcaatatcga 1537
Query: 708 tattaaaatttattcctatttatgaaactatcaacaattcaaaatgatggccataccctt 767
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 tattaaaatttagtactatttatgaaactatcaacaattcaaaatgatggccataccctt 1477
Query: 768 caaaaagaagatttttaccagggaaagaggaaagctactgggataaaggtattt 821
||||||| ||| | ||| || ||||||||||||||||||| |||| ||||||||
Sbjct: 1476 caaaaag-agaatattaacaaggaaagaggaaagctactgtgatagaggtattt 1424
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8856
Number of Sequences: 1807
Number of extensions: 8856
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)