BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG03FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1667 1390 0.0
>3x_Contig1667
Length = 12071
Score = 1390 bits (701), Expect = 0.0
Identities = 764/779 (98%), Gaps = 5/779 (0%)
Strand = Plus / Minus
Query: 87 cctatatttggaatagtttctgtgaatgtaacttttgcatccaatgtgtgaagtgtgttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 cctatatttggaatagtttctgtgaatgtaacttttgcatccaatgtgtgaagtgtgttt 3098
Query: 147 gaatctatcaatgcatagtctagacgacatgcttcatgtgcacctctgcttgctctccaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 gaatctatcaatgcatagtctagacgacatgcttcatgtgcacctctgcttgctctccaa 3038
Query: 207 gtatttaaagtagaatcacatgtagttccgccatatgtgatttggttagctggcgataat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 gtatttaaagtagaatcacatgtagttccgccatatgtgatttggttagctggcgataat 2978
Query: 267 gcagctatatctttcaaatcttgaactccaaacttttgttcccatgaatctacttgaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 gcagctatatctttcaaatcttgaactccaaacttttgttcccatgaatctacttgaccg 2918
Query: 327 gcctcaattgttaaaaatttatgtggcaatgatcctggtcttgaattcaagtcacctacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 gcctcaattgttaaaaatttatgtggcaatgatcctggtcttgaattcaagtcacctacc 2858
Query: 387 acaacaacagagtagccagccttcttatatagcttgaccaatttactaaaatcccacgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 acaacaacagagtagccagccttcttatatagcttgaccaatttactaaaatcccacgat 2798
Query: 447 tgacatgctctatggcactcgtatgctgcatcaccagtcaaagcataaggcgcatgcatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 tgacatgctctatggcactcgtatgctgcatcaccagtcaaagcataaggcgcatgcatg 2738
Query: 507 tgactattcaaaatagctaatggtggatattcaggtgatgttcttttcaaaagtgtgaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2737 tgactattcaaaatagctaatggtggatattcaggtgatgttcttttcaaaagtgtgaca 2678
Query: 567 ctaatagatttccccacgtaccagtcacctcgccaaaaagcgctgggtctgccgttgata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 ctaatagatttccccacgtaccagtcacctcgccaaaaagcgctgggtctgccgttgata 2618
Query: 627 ggaaacctatacaaaaatgtggactcaatangtatcttcgatagtattgctaatccaggc 686
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2617 ggaaacctatacaaaaatgtggactcaataggtatcttcgatagtattgctaatccaggc 2558
Query: 687 ccgctaatcattcctgatttaaatcttctgtagtatggatacct-tgtgttgcatctctc 745
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 2557 ccgctaatcattcctgatttaaatcttctgtagtatggatacctgtgt-ttgcatctctc 2499
Query: 746 tactatgtaattccaattctcatcacaccaaacttctttgcatgcaacaacatcgnattg 805
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 2498 tactatgtaattccaatcctcatcacaccaaacttcttgcaatgcaacaacatcgtattg 2439
Query: 806 gtcttttagtatcattcgggattctgatccccaaaatattcctgcattcaaaataccgg 864
|| ||||||||||||| ||||||||||||| ||||| ||||||||| |||| ||||||
Sbjct: 2438 ttc-tttagtatcattc-ggattctgatcccaaaaat-ttcctgcatccaaattaccgg 2383
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5429
Number of Sequences: 1807
Number of extensions: 5429
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)