BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG04FM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 957 0.0
>3x_Contig1335
Length = 8696
Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Minus
Query: 86 tgtggaaaacatcagaaagagcatatgtttttgctatgagtcttgttccgaaagaagggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 tgtggaaaacatcagaaagagcatatgtttttgctatgagtcttgttccgaaagaagggt 1239
Query: 146 atatttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtcttttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 atatttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtcttttt 1179
Query: 206 cgtcctcttcttgaataggcaaaataatatttcttggaatgatattcgatacactagaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 cgtcctcttcttgaataggcaaaataatatttcttggaatgatattcgatacactagaag 1119
Query: 266 taagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 taagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattg 1059
Query: 326 attcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 attcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgac 999
Query: 386 catactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 catactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatg 939
Query: 446 aatcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aatcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaac 879
Query: 506 ttccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagctta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagctta 819
Query: 566 aaa 568
|||
Sbjct: 818 aaa 816
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,769
Number of Sequences: 1807
Number of extensions: 16769
Number of successful extensions: 240
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)