BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG04RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1283 0.0
>3x_Contig1570
Length = 12233
Score = 1283 bits (647), Expect = 0.0
Identities = 784/824 (95%), Gaps = 6/824 (0%)
Strand = Plus / Minus
Query: 46 cgttaccatatgtaggcgatacaggtgccggttcaaggcattctgatgtgtcaaactcaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9116 cgttaccatatgtaggcgatacaggtgccggttcaaggcattctgatgtgtcaaactcaa 9057
Query: 106 aacttccgaggccattggcgtcttcgatgacagtttcgcccttataggttaagccaactc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9056 aacttccgaggccattggcgtcttcgatgacagtttcgcccttataggttaagccaactc 8997
Query: 166 cgtatttcttggcgatagtctccacttggtccatgattttttgttcagtgtcgtggcaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8996 cgtatttcttggcgatagtctccacttggtccatgattttttgttcagtgtcgtggcaat 8937
Query: 226 tggatccgatgttgattctatggttaatgtatagtgtagatagttctggcaaggcgttga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8936 tggatccgatgttgattctatggttaatgtatagtgtagatagttctggcaaggcgttga 8877
Query: 286 ttttgaatccgctatggaaaatatcagctgcctgcgtagtctttatcaaccatttgaatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8876 ttttgaatccgctatggaaaatatcagctgcctgcgtagtctttatcaaccatttgaatt 8817
Query: 346 tgtcattaccactgacccaatctaccacatggtcccttgcatacttgctgtgctcgtaat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8816 tgtcattaccactgacccaatctaccacatggtcccttgcatacttgctgtgctcgtaat 8757
Query: 406 gacggattgcatttctggggagaccgatatcgtcagtgtcagtgtgttctaccatacagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8756 gacggattgcatttctggggagaccgatatcgtcagtgtcagtgtgttctaccatacagt 8697
Query: 466 acaaatngttcaagaacggattttccaaatggagggacggtttgaatggattcgtctcta 525
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8696 acaaatgtttcaagaacggattttccaaatggagggacggtttgaatggattcgtctcta 8637
Query: 526 cactatggatcaaatcagccattataccaataccagtgttttcaggaggcaccgaagaat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8636 cactatggatcaaatcagccattataccaataccagtgttttcaggaggcaccgaagaat 8577
Query: 586 gttctccctttgtgttcaactgaattatgctgcttaatgaacccttttcaccaactgccg 645
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8576 gtcctccctttgtgttcaactgaattatgctgcttaatgaacccttttcaccaactgccg 8517
Query: 646 ntaaagcgaaataggtgttacaaattttctctaccgaacttccacccttatttatcatgg 705
||||||||||||||||| || |||||||||||||||||||||||||| || || ||||
Sbjct: 8516 gtaaagcgaaataggtgtcaccaattttctctaccgaacttccaccctcatctacaatgg 8457
Query: 706 catatttcccgtcagtgccattatttgtcccataaggggcttctttattgttctgggcac 765
||||| |||||||||||||| ||||||| |||||||| ||| |||| || |||||||||
Sbjct: 8456 catatatcccgtcagtgcca-tatttgt-ccataaggtgctcgttta-tggtctgggcac 8400
Query: 766 catattccccacccactttttttttaaattccaattcccagaatacagttcgcttttgtt 825
||||| | ||||| |||| || | |||| | ||| || ||| ||||| |||||| |||
Sbjct: 8399 catatccgccaccaacttcttcgtcaaatccaaatgccaagatcacagtacgctttggtt 8340
Query: 826 tgggaatccccccctaattaataatttccctgatttcaaaaacc 869
||||||| ||| |||||||||||| | |||| ||||||||||
Sbjct: 8339 --ggaatccgcccttaattaataattccactga-ttcaaaaacc 8299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6281
Number of Sequences: 1807
Number of extensions: 6281
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)