BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG05FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1203 0.0
>3x_Contig1669
Length = 15503
Score = 1203 bits (607), Expect = 0.0
Identities = 703/727 (96%), Gaps = 6/727 (0%)
Strand = Plus / Plus
Query: 86 atatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgacatccg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036 atatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgacatccg 6095
Query: 146 ggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagagggaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6096 ggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagagggaag 6155
Query: 206 gcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctcttgaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6156 gcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctcttgaag 6215
Query: 266 tagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttttataa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6216 tagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttttataa 6275
Query: 326 tgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttagtatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6276 tgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttagtatct 6335
Query: 386 gctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactcttaaacgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6336 gctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactcttaaacgc 6395
Query: 446 cgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaatatttgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6396 cgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaatatttgt 6455
Query: 506 ttcctattttcccagatctttcgaaatc-aattttacttttatcgaaaatgttcttattt 564
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6456 ttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttcttattt 6515
Query: 565 caatttttctatttggtggcaatagggtaaaaaaggagggagggtaatcagaatattcta 624
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6516 caatttttcta-ttggtgacaatagggtaaaaaaggagggagggtaatcagaatattcta 6574
Query: 625 ttctagtactgcaatgaggagatagaaacagtgagatggaccttgcacgaagttctacca 684
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 6575 ttctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttctacaa 6634
Query: 685 gaatatgacagccgtccttttactggacctttcttgtgctttagttatttaaggtgatat 744
|||||||||||| ||| || ||||||||| |||||||||||||||||||| |||||||||
Sbjct: 6635 gaatatgacagcagtcattatactggacc-ttcttgtgctttagttattt-aggtgatat 6692
Query: 745 gttttgaattatatttggcggaattttgtaggtggtctttgagggctccccccattaaaa 804
| |||||||||| | || ||||| ||||||| |||| ||| |||| |||| ||||| |
Sbjct: 6693 g-tttgaattattatatgcagaattatgtaggt-gtctctgaaggctaccccaattaaga 6750
Query: 805 gagttgc 811
|||||||
Sbjct: 6751 gagttgc 6757
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6878
Number of Sequences: 1807
Number of extensions: 6878
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)