BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG05RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1685 1479 0.0
>3x_Contig1685
Length = 14400
Score = 1479 bits (746), Expect = 0.0
Identities = 802/814 (98%), Gaps = 5/814 (0%)
Strand = Plus / Minus
Query: 43 gctttgccattccagtttaccagtcgatgtttcgacaactcctagttcctttaaatgcga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12022 gctttgccattccagtttaccagtcgatgtttcgacaactcctagttcctttaaatgcga 11963
Query: 103 tctttcagatgggtctggcttgaatatccattgtgtcacacggccatcggcattagtctt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11962 tctttcagatgggtctggcttgaatatccattgtgtcacacggccatcggcattagtctt 11903
Query: 163 ggcaatcgcaaattgggactcactttcaataattgctgtatcattatcagagttaagtgt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11902 ggcaatcgcaaattgggactcactttcaataattgctgtatcattatcagagttaagtgt 11843
Query: 223 aaggtgagagagcgtacatacgacactttctgcaggtttgcccgatactgtatccaaaat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11842 aaggtgagagagcgtacatacgacactttctgcaggtttgcccgatactgtatccaaaat 11783
Query: 283 atgacatgtaagtggaactgacatactggaattccgtttggatttggtttgaatggacaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11782 atgacatgtaagtggaactgacatactggaattccgtttggatttggtttgaatggacaa 11723
Query: 343 ataacgtctatcgaacagctaaccgtccctatatctctctaaagagcatcatacacactt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11722 ataacgtctatcgaacagctaaccgtccctatatctctctaaagagcatcatacacactt 11663
Query: 403 tggatacttattttatgtgtctcgctttatcaacattcttttcctgatggtttaaatagt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11662 tggatacttattttatgtgtctcgctttatcaacattcttttcctgatggtttaaatagt 11603
Query: 463 tcgaaagtcaatttaacaatatgatttttccaggccttcaaacacggacagaaccgaact 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11602 tcgaaagtcaatttaacaatatgatttttccaggccttcaaacacggacagaaccgaact 11543
Query: 523 catcgaagataagagaataatagaaattcgtaacactttcagctggacatcgcaagaggt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11542 catcgaagataagagaataatagaaattcgtaacactttcagctggacatcgcaagaggt 11483
Query: 583 taagtagtgtttgctatatggtgacatggaacatcatgttctcggctatgagacattcca 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 11482 taagtagtgtttgctatatggtgacatggaacatcatgttctcggctatgagacatccaa 11423
Query: 643 acacggctcacgatatcctgtattcttgactcaattgctgccgacaagcaagtggtatgg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11422 acacggctcacgatatcctgtattcttgactcaattgctgccgacaagcaagtggtatgg 11363
Query: 703 taaagcaacatcgttaacaattctgagtaattataagaacctagagactttcgaggaaat 762
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 11362 taaagcaacatcgttaacaattcggagtatttataagaacctagagac-ttcgaggaaat 11304
Query: 763 ggaatactgagtaccttatttacaacagcttcatttaaagacattttcctggtatttaaa 822
|||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||
Sbjct: 11303 ggaatactgagtaccttatttacaacagctcca-ttagagacattttcct-gtatttaaa 11246
Query: 823 ccacccaatttactagtatttagaatatgtggac 856
|||||||| ||||||||||| || ||||||||||
Sbjct: 11245 ccacccaa-ttactagtattaag-atatgtggac 11214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6269
Number of Sequences: 1807
Number of extensions: 6269
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)