BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG06FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1244 1136 0.0
>3x_Contig1244
Length = 4689
Score = 1136 bits (573), Expect = 0.0
Identities = 615/625 (98%), Gaps = 3/625 (0%)
Strand = Plus / Minus
Query: 86 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 2135
Query: 146 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 2075
Query: 206 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 2015
Query: 266 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 1955
Query: 326 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 1895
Query: 386 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 1835
Query: 446 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 1775
Query: 506 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 1715
Query: 566 tatgatacttttatacatagatcgg-ccaatttaccatttatttcgcacttaattataaa 624
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct: 1714 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcacttaattataaa 1655
Query: 625 gatctattgattccattcc-acataatataattcgaacctttcttgaacactccagtagt 683
||||||| ||||| ||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1654 gatctatagattcaattccaacataatataatcggaacc-ttcttgaacactccagtagt 1596
Query: 684 tgtttagtctagtgacatcttacct 708
|||||||||||||||||||| ||||
Sbjct: 1595 tgtttagtctagtgacatctaacct 1571
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8454
Number of Sequences: 1807
Number of extensions: 8454
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)