BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG07RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 553 e-157
>3x_Contig1321
Length = 8217
Score = 553 bits (279), Expect = e-157
Identities = 300/306 (98%), Gaps = 1/306 (0%)
Strand = Plus / Minus
Query: 45 tctatcgagttcaatttgcctactttgaatgtttataatattctttaacggaatgacagt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tctatcgagttcaatttgcctactttgaatgtttataatattctttaacggaatgacagt 702
Query: 105 agttttgttatttaccatggcagagtgatcgatggtcactatttcattatcttcaacagt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agttttgttatttaccatggcagagtgatcgatggtcactatttcattatcttcaacagt 642
Query: 165 gggtgtcttttccaccttatgtttgaattcttttatcaataaattcatctgattatctga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gggtgtcttttccaccttatgtttgaattcttttatcaataaattcatctgattatctga 582
Query: 225 taatgcaataaatgaaacctttggtaatttatcctttgcttcaattggnttctctgagta 284
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 581 taatgcaataaatgaaacctttggtaatttatcctttgcttcaattgggttctctgagta 522
Query: 285 cacccatgtacccttctgcatcaataaaagttttttgttagcgtacaaatttctgcactt 344
|||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||
Sbjct: 521 cacccatgtacccttctgcatcaataaaag-tctttggtagcgtacaaattcctgcactt 463
Query: 345 tgtttt 350
|||||
Sbjct: 462 ggtttt 457
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,094
Number of Sequences: 1807
Number of extensions: 23094
Number of successful extensions: 2393
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)