BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG08FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1168 0.0
>3x_Contig1502
Length = 14970
Score = 1168 bits (589), Expect = 0.0
Identities = 687/708 (97%), Gaps = 9/708 (1%)
Strand = Plus / Minus
Query: 86 ttcaataaaaggcataaatcttccttagttggatgtattgatatattttgacataaagag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280 ttcaataaaaggcataaatcttccttagttggatgtattgatatattttgacataaagag 8221
Query: 146 atgaaatactcctttgccaattttgccttggatgggagagccaaaagagataagagaact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 atgaaatactcctttgccaattttgccttggatgggagagccaaaagagataagagaact 8161
Query: 206 gatactatgctttgacgagggatagatgtatcttggaatgcttcgccatgagtagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160 gatactatgctttgacgagggatagatgtatcttggaatgcttcgccatgagtagatatg 8101
Query: 266 atatccaaagccaaaagtagctgttcttcctcaggatcttcttccacaaactcgctacga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8100 atatccaaagccaaaagtagctgttcttcctcaggatcttcttccacaaactcgctacga 8041
Query: 326 tttgtaggtttattagcattcttgattgcaactttttta-ccgatttccattacttttac 384
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8040 tttgtaggtttattagcattcttgattgcaacttttttacccgatttccattacttttac 7981
Query: 385 gagtagtggaaggatataagtcaatgccatagattggaaaggtatttgtctgcaaccatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7980 gagtagtggaaggatataagtcaatgccatagattggaaaggtatttgtctgcaaccatg 7921
Query: 445 tttgattttgaataatgcagttgaaatcagttccaatttagtctctgaattcagatctga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7920 tttgattttgaataatgcagttgaaatcagttccaatttagtctctgaattcagatctga 7861
Query: 505 aagaagatgaggaactctatgaactatcatcgttgcgtaaccaacagttttagcgaacat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7860 aagaagatgaggaactctatgaactatcatcgttgcgtaaccaacagttttagcgaacat 7801
Query: 565 tcctaacctatcatccaacanaaaggatatttgcaaaaatacgtcaaatccgagttgat- 623
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 7800 tcctaacctatcatccaacaaaaaggataattgcaaaaatacgtcaaatccgag-tgatc 7742
Query: 624 caaatagcaaat-aaagtttttctgttgtagaatatct-acaacg-attcacagatgtgg 680
|||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 7741 caaatagcaaataaaagtttttctgttgtagaatatctaacaacgaattcacagatgtgg 7682
Query: 681 ggaaccaattattgataccattatccaaaaagattttgtttagaagccaactgagaaatg 740
||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 7681 ggaaccaatatttgataccattatcc-aaaagatttgcttcagaagccaactgagaaatg 7623
Query: 741 atatcaataaccccttttcacagattaaaacgaactatttaatacttg 788
|||||||||| | | ||||||||| |||||||| || ||||||||||
Sbjct: 7622 atatcaataa-cgcatttcacaga-taaaacgagctcattaatacttg 7577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8006
Number of Sequences: 1807
Number of extensions: 8006
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)