BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG08RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1463 0.0
>3x_Contig1319
Length = 7600
Score = 1463 bits (738), Expect = 0.0
Identities = 848/880 (96%), Gaps = 4/880 (0%)
Strand = Plus / Minus
Query: 47 taagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggtaaaat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 taagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggtaaaat 1487
Query: 107 gcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataaacgt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataaacgt 1427
Query: 167 tatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcatccacatg 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1426 tatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagccacatg 1367
Query: 227 ctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatgaccc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatgaccc 1307
Query: 287 aaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttacaaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 aaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttacaaag 1247
Query: 347 gaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccctgcg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccctgcg 1187
Query: 407 atatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaatcaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 atatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaatcaaa 1127
Query: 467 tgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgacaatat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 tgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgacaatat 1067
Query: 527 gaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgagtagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgagtagg 1007
Query: 587 aaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgnacactcagatct 646
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1006 aaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgacaactcagatct 947
Query: 647 ctgggaaactgaagatgagtcggatattgacacaactaatgacgtttatggattggaaca 706
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 946 ctgggaaactgaagatgagtcggatattgacacaactaatgacgttaatggattggacca 887
Query: 707 aatatacgctgaaatattatcagtttttgaggaggatactgggagtgatagntataatga 766
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 886 aatatacgctgaaaatatatcagtttttgaggaggatactgggagtgatagttataatga 827
Query: 767 tgggcaaatttaaccggtgc-aatatctatgaatgactttgctgataatggaagtacgcc 825
||| |||||| ||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 826 tggtcaaattcaaccggtgcaaatatctatgaatgactttgctgatagtgaaagtacgcc 767
Query: 826 tactataaagcc-cgcccttagccgacaaaaaccgttagggaagg-ttggtatacttg-g 882
||||| |||||| ||| || |||||||||| | || || |||||| ||| ||||||| |
Sbjct: 766 tactaaaaagccacgcactaagccgacaaagatcgataaggaaggattgaaatacttgag 707
Query: 883 agagttggaagggtttcataggatgggggtaatttctggg 922
|| |||||||| ||||||||||| || ||||||||||||
Sbjct: 706 agttttggaaggctttcataggattggtgtaatttctggg 667
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6956
Number of Sequences: 1807
Number of extensions: 6956
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)