BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG09FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1170 0.0
>3x_Contig1400
Length = 8536
Score = 1170 bits (590), Expect = 0.0
Identities = 651/664 (98%), Gaps = 6/664 (0%)
Strand = Plus / Minus
Query: 88 ttaccaacgaagatctacaaacagctgaatctaaaaagactgataagactgagccttcca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 ttaccaacgaagatctacaaacagctgaatctaaaaagactgataagactgagccttcca 8308
Query: 148 agccctctgaagagataaatctagagggtgttgcgaaacctgatcctaaaccatcatcta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8307 agccctctgaagagataaatctagagggtgttgcgaaacctgatcctaaaccatcatcta 8248
Query: 208 cacctaaaaaaaggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8247 cacctaaaaaaaggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctc 8188
Query: 268 acctgagcaactttctgattagactacattggacagtaagtaaaatcatttttaaacgca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8187 acctgagcaactttctgattagactacattggacagtaagtaaaatcatttttaaacgca 8128
Query: 328 ataaccactgcatagacttgtaacatttgggaaccatataaaatttaattcaaatacaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8127 ataaccactgcatagacttgtaacatttgggaaccatataaaatttaattcaaatacaaa 8068
Query: 388 ggttgcagaagccattatttcgtcagattactacgatctattatatacaacgttgtgtaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8067 ggttgcagaagccattatttcgtcagattactacgatctattatatacaacgttgtgtaa 8008
Query: 448 aggcacatcctaaatagctgccttccgtttcctttttcactcttcgttattgtttcatgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8007 aggcacatcctaaatagctgccttccgtttcctttttcactcttcgttattgtttcatgc 7948
Query: 508 ataatccatacatttcatgttcgctcggaacttctatggcattcagatttcgttttgaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7947 ataatccatacatttcatgttcgctcggaacttctatggcattcagatttcgttttgaga 7888
Query: 568 aaa-aaaaaaaatatgaacggaaagtaaatgaatcttaggtctgttcaaac-atttagga 625
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7887 aaaaaaaaaaaatatgaacggaaagtaaatgaatcttaggtctgttcaaacaatttagg- 7829
Query: 626 aatcagtttgagttttggacttagtcactattaataggttgnatttcctttttatctatt 685
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 7828 aatcagtttgagttttggacttagtcactattaataggttgtatttcc-ttttatctatt 7770
Query: 686 ctctttctagtaccancattttagcctaggttctgggcgaaatttataatccagaggaaa 745
||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 7769 ctctttctagtacagtca-tttagcctaggttct-ggcagaatttataatccagaggaac 7712
Query: 746 caat 749
||||
Sbjct: 7711 caat 7708
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,331
Number of Sequences: 1807
Number of extensions: 13331
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)