BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG09RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig703 1314 0.0
>3x_Contig703
Length = 2482
Score = 1314 bits (663), Expect = 0.0
Identities = 723/739 (97%), Gaps = 3/739 (0%)
Strand = Plus / Plus
Query: 99 tagtgttctgcgaaatatggttgaaggacaccctttggagaaggttctgagtgctagtgc 158
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tagtgttctgcgaa-tatggttgaaggacaccctttggagaaggttctgagtgctagtgc 65
Query: 159 actaacttcaagcagtaacagctcatcaagaagtagtattcccttgacatttgaagtcat 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 actaacttcaagcagtaacagctcatcaagaagtagtattcccttgacatttgaagtcac 125
Query: 219 tcatcaacacaagactcagatcaagcggttccagaatgtgttaactagtgatagtgccac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcatcaacacaagactcagatcaagcggttccagaatgtgttaactagtgatagtgccac 185
Query: 279 ccaagatgacggcaacgatgaccctagtagaaatcaagggaatgaggtgagtgaacaatt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccaagatgacggcaacgatgaccctagtagaaatcaagggaatgaggtgagtgaacaatt 245
Query: 339 tcatttgctgcagtatcctgagcagcatcaacatcaacatcaaaataaacatcaacatca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcatttgctgcagtatcctgagcagcatcaacatcaacatcaaaataaacatcaacatca 305
Query: 399 acatcagcagcagcacgaaaaaggagatctggacgaggtgctctgtacccaacggatgtt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acatcagcagcagcacgaaaaaggagatctggacgaggtgctctgtacccaacggatgtt 365
Query: 459 caggaaactatctactgggagcgatgatgtgaaaaaggtttattcgcatgcacagctatc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caggaaactatctactgggagcgatgatgtgaaaaaggtttattcgcatgcacagctatc 425
Query: 519 gtccactgcacatggagtgagattattatccaaaaatctatccaacaccaaagtggcatt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtccactgcacatggagtgagattattatccaaaaatctatccaacaccaaagtggcatt 485
Query: 579 agaagttaagaaattaatgatagtaactaaaaggcaagatgattctttgatctacttgac 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaagttaagaaattaatgatagtaactaaaaggcaagatgattctttgatctacttgac 545
Query: 639 aagggagttggtagagtggatccttgtcaattattcaacgattgatgtttatgtggaata 698
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 546 aagggagttggtagagtggatccttgtcaattatccaacgatagatgtttatgtggaata 605
Query: 699 cgtttttgaacgaaacgaatctttc-acgcaaaaaatttgtgtaaagacagtaaatgtgg 757
|| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct: 606 cggttttgaacgaaacgaatctttcaacgcaaaagagttgtgtaaagacagtaaatgtgg 665
Query: 758 ttcgcataagattaaatattggtcttcagaaatttgtgaaagaacccgaatatttcttgg 817
||||||||||||| ||||||||||| ||| ||||||||||||||| |||| ||||||| |
Sbjct: 666 ttcgcataagattcaatattggtctccag-aatttgtgaaagaacacgaagatttctttg 724
Query: 818 accttattataacacttgg 836
|||| || |||||||||||
Sbjct: 725 acctaatcataacacttgg 743
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7032
Number of Sequences: 1807
Number of extensions: 7032
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)