BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG10FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1267 0.0
>3x_Contig1354
Length = 7778
Score = 1267 bits (639), Expect = 0.0
Identities = 670/678 (98%), Gaps = 2/678 (0%)
Strand = Plus / Plus
Query: 90 tttaccttcagggtctagtgtatcgacaatacttattaccaccgacagcatatgaaaaag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6056 tttaccttcagggtctagtgtatcgacaatacttattaccaccgacagcatatgaaaaag 6115
Query: 150 aataataatagaaataaacaatatatagcaactgtaacagagattgatgagtgggtgggt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 aataataatagaaataaacaatatatagcaactgtaacagagattgatgagtgggtgggt 6175
Query: 210 gggtcggaagggaaaaaggaagagacatcgggctgagaccagaagagccagattaggaaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6176 gggtcggaagggaaaaaggaagagacatcgggctgagaccagaagagccagattaggaaa 6235
Query: 270 ataaaacgaaaggctagaatagaaaacacaatttacataccgaaaaactggcgcacggca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6236 ataaaacgaaaggctagaatagaaaacacaatttacataccgaaaaactggcgcacggca 6295
Query: 330 atacgcaatctctcgtaccacacctgagagtaaaacgcctttcgatcaccttaactcccg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6296 atacgcaatctctcgtaccacacctgagagtaaaacgcctttcgatcaccttaactcccg 6355
Query: 390 tgtcccttttcaacatcactcatgcatatattggatatttaaatctggtcttgcatctgc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6356 tgtcccttttcaacatcactcatgcatatattggatatttaaatctggtcttgcatctgc 6415
Query: 450 cactccaaactggaaacagagtgaaaccagccataattcacaatcggccgatccagcaag 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416 cactccaaactggaaacagagtgaaaccagccataattcacaatcggccgatccagcaag 6475
Query: 510 acatttcgtactcttgaggaactgttgatgatctaaggcaccaccgagatgaactcggtg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6476 acatttcgtactcttgaggaactgttgatgatctaaggcaccaccgagatgaactcggtg 6535
Query: 570 cccctcacttcaagcgctcttctttaatttctgtgctgcgttgaagagttggttcttttt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536 cccctcacttcaagcgctcttctttaatttctgtgctgcgttgaagagttggttcttttt 6595
Query: 630 ttctca-caaaaatctgtgcttagaagttctgggcatggggagttcttctcaaagctttt 688
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 ttctcagcaaaaatctgtgcttagaagttctgggcatggggagttcttctcaaagctttt 6655
Query: 689 tgcgggtnttagccaccgtttcatgcacaggggttttaagcttgcttgagttttttccaa 748
||||||| || ||||||||| |||||||| ||||||||||||||||||||||||| | ||
Sbjct: 6656 tgcgggtttttgccaccgttccatgcaca-gggttttaagcttgcttgagtttttccgaa 6714
Query: 749 ccaagggttgtaaaagca 766
| ||||||||||||||||
Sbjct: 6715 caaagggttgtaaaagca 6732
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5691
Number of Sequences: 1807
Number of extensions: 5691
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)