BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG10RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig370 513 e-145
3x_Contig290 214 2e-55
>3x_Contig370
Length = 983
Score = 513 bits (259), Expect = e-145
Identities = 266/267 (99%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 48 aaattgaaatat-attgttttgagaggcgaaacgtaattaccgattgatcgttaatagga 106
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaattgaaatattattgttttgagaggcgaaacgtaattaccgattgatcgttaatagga 208
Query: 107 agattggaagagagaagagaaaagagagtaccagtcggcttaatcatcttctgtcagagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agattggaagagagaagagaaaagagagtaccagtcggcttaatcatcttctgtcagagt 148
Query: 167 ggggtttgtttcggattattgggtaagtccttaactctttgtatttggggtgtgttttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ggggtttgtttcggattattgggtaagtccttaactctttgtatttggggtgtgttttct 88
Query: 227 tctttgtttgaccagtaatacacatttcttttcaggttgcgagcaacacaacaaagagtg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tctttgtttgaccagtaatacacatttcttttcaggttgcgagcaacacaacaaagagtg 28
Query: 287 ttattctgtactttaataataagcacg 313
|||||||||||||||||||||||||||
Sbjct: 27 ttattctgtactttaataataagcacg 1
>3x_Contig290
Length = 1717
Score = 214 bits (108), Expect = 2e-55
Identities = 190/211 (90%), Gaps = 5/211 (2%)
Strand = Plus / Minus
Query: 557 tatcttggaagacagtaccttgattttggaacaat-agcacagcataccactgaaacgga 615
||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1710 tatcttgnaagacagtac-ttgattt-ggaacaattagcacagcataccactgaaacgga 1653
Query: 616 caacatttccagaaagtttgaaatttcattt-gtaagattaattt-gcccaaccattcat 673
|||||| |||||||||| ||||||||||||| |||||||| |||| ||| |||||| |||
Sbjct: 1652 caacatgtccagaaagtatgaaatttcatttggtaagatttatttggccaaaccatccat 1593
Query: 674 gactgagtcagatggtgtttcttattgcaagtatccgcaggaagcccgtcttagaaactt 733
|||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||
Sbjct: 1592 gactgagtcagatggtgtttctcatgcgatgtatccgcaggaagcccgtctcagaaactt 1533
Query: 734 gacttacgcattaggttttttttgggaaatt 764
||||||||||| |||||| ||| |||||||
Sbjct: 1532 gacttacgcatcaggtttatttgtggaaatt 1502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9049
Number of Sequences: 1807
Number of extensions: 9049
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)