BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG11FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 928 0.0
3x_Contig1655 357 3e-98
>3x_Contig1543
Length = 9648
Score = 928 bits (468), Expect = 0.0
Identities = 573/604 (94%), Gaps = 3/604 (0%)
Strand = Plus / Minus
Query: 330 tggttctaaagtatcagattctatatcaatttcgatagcagaatcctggctaatagcatt 389
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 9613 tggttctaaagtatcagatgctatatcaatgtcgatagcagaatcctggctaatagcatt 9554
Query: 390 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 9494
Query: 450 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 9434
Query: 510 agatgacaagattatcaaaggtatatgtgttcagcagcttatgccaggctcctattgagg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 agatgacaagattatcaaaggtatatgtgttcagcagcttatgccaggctcctattgagg 9374
Query: 570 cggtttgtagagcctcagcgtcttgtcattgaatggtgatctgtataacttctctagtga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 cggtttgtagagcctcagcgtcttgtcattgaatggtgatctgtataacttctctagtga 9314
Query: 630 tgcgtcaaaacgctaaatggaattctttacatatttcactttcgtgtcagtagggtaaca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 tgcgtcaaaacgctaaatggaattctttacatatttcactttcgtgtcagtagggtaaca 9254
Query: 690 tttgttgtgataattgtgtcacaggacataatacagatgatgcgactaagagattagttt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9253 -ttgttgtgataattgtgtcacaggacataatacagatgatgcgactaagagataagttt 9195
Query: 750 atacagtatttt-atgataccggtttacatcccaggcttaagatttttagagatttattt 808
|||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||| |
Sbjct: 9194 atacagtattttaatgatacgggttaacatcccaggcttaggatttttagagatttatat 9135
Query: 809 aataaa-gtttggaactaaatgaattgttttgtattaggggtttgatgttgctaatttta 867
|||||| ||||||||||| |||| ||||||||||| |||| ||||||||||| ||| ||
Sbjct: 9134 aataaaggtttggaactagatgagttgttttgtataagggtattgatgttgcttattata 9075
Query: 868 gcgggaaaactttcgttcaacccaattattccttgacgttgtgttttccaaaacagtttc 927
|||| ||| || ||| | | ||||| || ||||||||||||||||||| ||||| |
Sbjct: 9074 gcggaaaagctagcgtcacaacgaattagtcagtgacgttgtgttttccaaatcagttcc 9015
Query: 928 agtt 931
||||
Sbjct: 9014 agtt 9011
>3x_Contig1655
Length = 16228
Score = 357 bits (180), Expect = 3e-98
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 87 cttcctttcacgttccaatctttcttcttctttccttttcgacttagcttgcttctcttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cttcctttcacgttccaatctttcttcttctttccttttcgacttagcttgcttctcttt 134
Query: 147 ttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcattgtc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcattgtc 74
Query: 207 ttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtagcagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtagcagt 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7621
Number of Sequences: 1807
Number of extensions: 7621
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)