BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG11RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig573 1011 0.0
3x_Contig450 549 e-156
3x_Contig1590 159 1e-38
3x_Contig420 159 1e-38
3x_Contig1362 155 2e-37
3x_Contig356 155 2e-37
3x_Contig1027 153 8e-37
>3x_Contig573
Length = 1773
Score = 1011 bits (510), Expect = 0.0
Identities = 547/554 (98%), Gaps = 4/554 (0%)
Strand = Plus / Minus
Query: 353 gaggattctggaacggttcacttggaagtctttctttcacctgagcataatatttgtacc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 gaggattctggaacggttcacttggaagtctttctttcacctgagcataatatttgtacc 1708
Query: 413 aatgccggaagaaaaataacaatccgagcccatcgaatggcccaccgatgagatgagatc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 aatgccggaagaaaaataacaatccgagcccatcgaatggcccaccgatgagatgagatc 1648
Query: 473 aacgaaactgtcgagtcacacttcctaggtcattattacttatagtaaaacaatttttca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 aacgaaactgtcgagtcacacttcctaggtcattattacttatagtaaaacaatttttca 1588
Query: 533 gtaatattcaaaagcatcagcttgatcttcgagtcactggataaacggagttcacttgtc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 gtaatattcaaaagcatcagcttgatcttcgagtcactggataaacggagttcacttgtc 1528
Query: 593 aggacgcattaaacagatcaaattataattaacatggacaaagagactcttcgagaaatt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 aggacgcattaaacagatcaaattataattaacatggacaaagagactcttcgagaaatt 1468
Query: 653 aaagagatcagtaaagagctaagataagaggataagtctttaaagaatcggttgcagagt 712
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1467 aaagagatcagtaaagagctaagaaaagaggataagtctttaaagaatcggttgcagagt 1408
Query: 713 ataatattcgataacaattttctgaaagaacaagtgttccccactttccaatacccagtg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 ataatattcgataacaattttctgaaagaacaagtgttccccactttccaatacccagtg 1348
Query: 773 gtgccaaatgaaagatgtggattgtggtactgcgaccctaaaatttatgatacaacaagt 832
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1347 gtgccaaatgaaagatgtggattgtggtactgcgaccctaaaatatatgatacaacaagt 1288
Query: 833 tacttcaaatccacagatgggcacaatgaatcaagtgggattttagcacaatgaaggttg 892
|||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||
Sbjct: 1287 tacttcaaatccacagatggtcac-atgaatcaa-tgggattttagcacaa-gaaggttg 1231
Query: 893 aactttccatcttt 906
||| ||||||||||
Sbjct: 1230 aac-ttccatcttt 1218
>3x_Contig450
Length = 1374
Score = 549 bits (277), Expect = e-156
Identities = 290/293 (98%), Gaps = 1/293 (0%)
Strand = Plus / Minus
Query: 38 atcacgctttgt-acagtgacctgataaaaagaatactctaacattatatagtcgcaagg 96
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atcaagctttgtcacagtgacctgataaaaagaatactctaacattatatagtcgcaagg 234
Query: 97 atacgtaactttttttatagaggaacttaaataaaaataaatataggctggaatcgtatt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atacgtaactttttttatagaggaacttaaataaaaataaatataggctggaatcgtatt 174
Query: 157 ggtccccttgtgacaaaattaactgaccctttgatgttcatcatcttcctcttgttagtt 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ggtccccttgtgacaaaattaactgaccctttgatgttcatcatcttcctcttgttagtt 114
Query: 217 gttttatgttttctttttcgggatgtggtatacgaacttaaaaaattgcttccaaccaga 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gttttatgttttctttttcgggatgtggtatacgaacttaaaaaattgcttccaaccaga 54
Query: 277 gtcgaactgatgatctccacattactagtgtggcgccttaccaacttggccat 329
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 53 gtcgaactgatgatctccacattactagtatggcgccttaccaacttggccat 1
>3x_Contig1590
Length = 13653
Score = 159 bits (80), Expect = 1e-38
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 263 tgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgccttaccaact 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9527 tgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgccttaccaact 9468
Query: 323 tggccatagaagctgttatt 342
||||||||||||||||||||
Sbjct: 9467 tggccatagaagctgttatt 9448
>3x_Contig420
Length = 1461
Score = 159 bits (80), Expect = 1e-38
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 256 aaaaaattgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgcctt 315
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaaaaaatgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgcctt 834
Query: 316 accaacttggccatagaagctgtt 339
||||||||||||||||||||||||
Sbjct: 835 accaacttggccatagaagctgtt 858
>3x_Contig1362
Length = 8864
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 263 tgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgccttaccaact 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8365 tgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgccttaccaact 8306
Query: 323 tggccatagaagctgtta 340
||||||||||||||||||
Sbjct: 8305 tggccatagaagctgtta 8288
>3x_Contig356
Length = 1664
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 263 tgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgccttaccaact 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgccttaccaact 370
Query: 323 tggccatagaagctgtta 340
||||||||||||||||||
Sbjct: 371 tggccatagaagctgtta 388
>3x_Contig1027
Length = 4522
Score = 153 bits (77), Expect = 8e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 256 aaaaaattgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgcctt 315
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2467 aaaaaaatgcttccaaccagagtcgaactgatgatctccacattactagtgtggcgcctt 2526
Query: 316 accaacttggccatagaagct 336
|||||||||||||||||||||
Sbjct: 2527 accaacttggccatagaagct 2547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8378
Number of Sequences: 1807
Number of extensions: 8378
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 7
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)