BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZG12FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1349 1043 0.0
>3x_Contig1349
Length = 5890
Score = 1043 bits (526), Expect = 0.0
Identities = 649/679 (95%), Gaps = 10/679 (1%)
Strand = Plus / Plus
Query: 87 ttctttaccatttttctcaacagtaccattatcactactcatagctgtttattcactgtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2788 ttctttaccatttttctcaacagtaccattatcactactcatagctgtttattcactgtt 2847
Query: 147 gctccggtacctggtattaaagttctaaagcggtgttaatagcctttccactgtttaact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2848 gctccggtacctggtattaaagttctaaagcggtgttaatagcctttccactgtttaact 2907
Query: 207 ttgatatgttcgtcnttcactgtactatgtcgacgactctggctttactttcattactag 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2908 ttgatatgttcgtctttcactgtactatgtcgacgactctggctttactttcattactag 2967
Query: 267 ttgatatacgtaaatatatatcgcttttcccggaatactgagtttgaaataaagaaggaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2968 ttgatatacgtaaatatatatcgcttttcccggaatactgagtttgaaataaagaaggaa 3027
Query: 327 agctgtcacagtaacgttttatttagctgcatttttcaagtttcaccagtaaggtagtta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3028 agctgtcacagtaacgttttatttagctgcatttttcaagtttcaccagtaaggtagtta 3087
Query: 387 actaaatcaaaagttgacttaatcatatttaggttattattttttttttttttgactttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3088 actaaatcaaaagttgacttaatcatatttaggttattattttttttttttttgactttg 3147
Query: 447 atgatattcatgaaaagtagagatggcccgtctgttggaatggaaaaacaagaagttgag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3148 atgatattcatgaaaagtagagatggcccgtctgttggaatggaaaaacaagaagttgag 3207
Query: 507 gtgaagtccggaacanctaagagagagacatagaacgacatataccttggtaaaattgaa 566
||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 3208 gtgaagtccggaacaactaagagagagacatagaacgacatatacctgggt-aaattgaa 3266
Query: 567 ag-aggcaaaaacgct--aaaaaaaaaatta-tagtgattaggtagggaaggttaagatt 622
|| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 3267 agaaggcaaaaacgctaaaaaaaaaaaattattagtgataaggtagggaaggttaagatt 3326
Query: 623 ctttttttcgaacctctccttc-gtaactttgcgagcaaatttca-caaaaaagttacct 680
||||||| | |||||||| | |||||| ||||||||||||||| |||||| |||||||
Sbjct: 3327 cttttttcgtagcctctcctacagtaactctgcgagcaaatttcagcaaaaaggttacct 3386
Query: 681 tttaactgtctcggaac-acatacgatctaatgagtggaaatccggaattttttttttgg 739
| ||||||| |||||| |||||||||||||||||||||| ||||| ||| |||| ||
Sbjct: 3387 ctaaactgtc-cggaacaacatacgatctaatgagtggaatcgcggaa-tttcttttcgg 3444
Query: 740 aacccctgcaccggaagaa 758
||||||||| ||||||||
Sbjct: 3445 gacccctgcaacggaagaa 3463
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,327
Number of Sequences: 1807
Number of extensions: 18327
Number of successful extensions: 480
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)