BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZH01FM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1666                                                         880   0.0  

>3x_Contig1666 
          Length = 16162

 Score =  880 bits (444), Expect = 0.0
 Identities = 486/500 (97%)
 Strand = Plus / Plus

                                                                         
Query: 85    agatatccaagccgtattcatctaattcgtggtaatcatgaatcacgtcagatcacccag 144
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15560 agatatccaagccgtattcatctaattcgtggtaatcatgaatcacgtcagatcacccag 15619

                                                                         
Query: 145   agttatggtttttatacggaatgtttgaacaaatttggcgagggaagtcaagtatggcag 204
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15620 agttatggtttttatacggaatgtttgaacaaatttggcgagggaagtcaagtatggcag 15679

                                                                         
Query: 205   tatttcacggatctattcgattatttgattcttgcatgtatcattgatgatacaattttc 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15680 tatttcacggatctattcgattatttgattcttgcatgtatcattgatgatacaattttc 15739

                                                                         
Query: 265   tgcgttcatggtggactttcacccaatattcaatccattgatcaaatacggattatcgat 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15740 tgcgttcatggtggactttcacccaatattcaatccattgatcaaatacggattatcgat 15799

                                                                         
Query: 325   aggatcagagaaatcccacatgatggcgccatggcagatttggtctggtcagaccctgaa 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15800 aggatcagagaaatcccacatgatggcgccatggcagatttggtctggtcagaccctgaa 15859

                                                                         
Query: 385   gacgacagaaacgatatcacttcttcacaattcaaagtctcaccgagaggtgctggttac 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15860 gacgacagaaacgatatcacttcttcacaattcaaagtctcaccgagaggtgctggttac 15919

                                                                         
Query: 445   actttcggtaaagctatagtggacaaattttttagcatcaatggtgtcacaaagatgctc 504
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15920 actttcggtaaagctatagtggacaaattttttagcatcaatggtgtcacaaagatgctc 15979

                                                                         
Query: 505   agagctcatcaactatgttacgagggatatcaagattattttggagggaaagtcaccact 564
             |||||||||||||||||| ||| ||| ||||| | ||||| |       |||||||||||
Sbjct: 15980 agagctcatcaactatgtaacgcgggctatcaggcttattctcccccccaagtcaccact 16039

                                 
Query: 565   gtttggtccgctcccaatta 584
             |||||| |||||||||||||
Sbjct: 16040 gtttggcccgctcccaatta 16059


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,882
Number of Sequences: 1807
Number of extensions: 11882
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)