BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC30ZH01RM1.SCF screened BAC_end (937 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig581 1225 0.0 >3x_Contig581 Length = 1616 Score = 1225 bits (618), Expect = 0.0 Identities = 678/694 (97%), Gaps = 3/694 (0%) Strand = Plus / Minus Query: 47 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 836 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 777 Query: 107 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 717 Query: 167 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 657 Query: 227 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 597 Query: 287 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 537 Query: 347 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 477 Query: 407 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 417 Query: 467 aaacgttttctttcgaatggattaccgacctttagagattcagcgtattgcttgaatttt 526 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 aaacgttttc-ttcgaatggattaccgacctttagagattcagcgtattgcttgaatttt 358 Query: 527 tctaagacctccttgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagact 586 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 tctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagact 298 Query: 587 ttaccggagttgtagaagataccaaaagcaatgtttttaacagctttattcaagtcagca 646 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 297 tcaccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagca 238 Query: 647 tcaccgaaaacgatattgggagacttaccacc-agttcttaagtgacctttcttggagga 705 ||||||||||||||||| |||||||||||||| |||||| |||||||| |||||| ||| Sbjct: 237 tcaccgaaaacgatatttggagacttaccaccaagttctaaagtgacc-ttcttgatgga 179 Query: 706 atcgggccaagttttcttaatgtgaccaccagta 739 ||||| ||||||||| ||||||||| ||||||| Sbjct: 178 atcggcacaagttttcataatgtgacgaccagta 145 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6658 Number of Sequences: 1807 Number of extensions: 6658 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 937 length of database: 10,358,551 effective HSP length: 16 effective length of query: 921 effective length of database: 10,329,639 effective search space: 9513597519 effective search space used: 9513597519 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)