BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZH01RM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig581                                                         1225   0.0  

>3x_Contig581 
          Length = 1616

 Score = 1225 bits (618), Expect = 0.0
 Identities = 678/694 (97%), Gaps = 3/694 (0%)
 Strand = Plus / Minus

                                                                       
Query: 47  cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 777

                                                                       
Query: 107 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 717

                                                                       
Query: 167 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 657

                                                                       
Query: 227 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 597

                                                                       
Query: 287 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 537

                                                                       
Query: 347 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 477

                                                                       
Query: 407 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 417

                                                                       
Query: 467 aaacgttttctttcgaatggattaccgacctttagagattcagcgtattgcttgaatttt 526
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaacgttttc-ttcgaatggattaccgacctttagagattcagcgtattgcttgaatttt 358

                                                                       
Query: 527 tctaagacctccttgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagact 586
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagact 298

                                                                       
Query: 587 ttaccggagttgtagaagataccaaaagcaatgtttttaacagctttattcaagtcagca 646
           | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 297 tcaccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagca 238

                                                                       
Query: 647 tcaccgaaaacgatattgggagacttaccacc-agttcttaagtgacctttcttggagga 705
           ||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||  |||
Sbjct: 237 tcaccgaaaacgatatttggagacttaccaccaagttctaaagtgacc-ttcttgatgga 179

                                             
Query: 706 atcgggccaagttttcttaatgtgaccaccagta 739
           |||||  ||||||||| ||||||||| |||||||
Sbjct: 178 atcggcacaagttttcataatgtgacgaccagta 145


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6658
Number of Sequences: 1807
Number of extensions: 6658
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)