BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH02FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1258 896 0.0
>3x_Contig1258
Length = 6899
Score = 896 bits (452), Expect = 0.0
Identities = 491/500 (98%), Gaps = 3/500 (0%)
Strand = Plus / Plus
Query: 88 gcatggaagattttttgctaccagtactttccctatcagcatcaacatttgacgatcctg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 gcatggaagattttttgctaccagtactttccctatcagcatcaacatttgacgatcctg 5523
Query: 148 gagaacgtaattgtgacatgaaggagtctataaaagatgtccgcggccgacgtggctggt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 gagaacgtaattgtgacatgaaggagtctataaaagatgtccgcggccgacgtggctggt 5583
Query: 208 gatggtttttcttatttgaaggaatttcgctttgtgaggaaacatgagaaggactcggca 267
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 gatggttttccggatttgaaggaatttcgctttgtgaggaaacatgagaaggactcggca 5643
Query: 268 tgagagcgctaggccctgattcccttcttgggatattaatgaattgtttattgttttcat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 tgagagcgctaggccctgattcccttcttgggatattaatgaattgtttattgttttcat 5703
Query: 328 cttcttcgaacgccctttttgtaagttcctctctttcttctccttcttcctcttcatcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 cttcttcgaacgccctttttgtaagttcctctctttcttctccttcttcctcttcatcaa 5763
Query: 388 ttgctagttctgctctatctccatgagattgacgcagctttctaatttcgatgatatcgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 ttgctagttctgctctatctccatgagattgacgcagctttctaatttcgatgatatcgt 5823
Query: 448 tctgtaacgaattttgaatcgagtcagccctcgatatagtcgtagtttctttttgaacct 507
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5824 tctgtaacgaattttgaatcgagtcagccctcgatatagtcgtagtttc-ttttgaacct 5882
Query: 508 tgaagttgagcctttaaaatgtgatactggaggagtttgggttataagagtgggttcctt 567
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| | |
Sbjct: 5883 tgaagttgagccttt-aaatgtgatactggaggagtttgggttagatgagtgggtt-cgt 5940
Query: 568 tgaaagaatgtctattattt 587
||||||||||||||||||||
Sbjct: 5941 tgaaagaatgtctattattt 5960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,294
Number of Sequences: 1807
Number of extensions: 15294
Number of successful extensions: 158
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)