BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH02RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig943 595 e-170
3x_Contig251 543 e-154
>3x_Contig943
Length = 2708
Score = 595 bits (300), Expect = e-170
Identities = 306/308 (99%)
Strand = Plus / Plus
Query: 49 cactcatcgcagcgtcgatttggcgagaggtgagatgttggcacatttgtagattcttta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 cactcatcgcagcgtcgatttggcgagaggtgagatgttggcacatttgtagattcttta 2456
Query: 109 tttcacagaatccatcgtcatccgctgcggcaggacagagtgacggatttgactttaaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 tttcacagaatccatcgtcatccgctgcggcaggacagagtgacggatttgactttaaga 2516
Query: 169 taattttgatatcatgtgacagcaagacatatcacgtttgacgactttgattatttttga 228
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2517 taattttgatatcatgtgacagcaagacatatcacgtttgacgactttgataatttttga 2576
Query: 229 aaaattcgaactctggaatcgattggaaactatgactctaaacggattcgaaaaagctct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 aaaattcgaactctggaatcgattggaaactatgactctaaacggattcgaaaaagctct 2636
Query: 289 agttgatttgaaatagcgtagttttatgtcacaaaatactttcgttcgtccataaacctt 348
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2637 agttgatttgaaatagcgtagttttatgtcacaaaatacttacgttcgtccataaacctt 2696
Query: 349 ttctgtaa 356
||||||||
Sbjct: 2697 ttctgtaa 2704
>3x_Contig251
Length = 1124
Score = 543 bits (274), Expect = e-154
Identities = 308/318 (96%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 337 tccataaaccttttctgtaagcttttgcaagctgtgatcaagttaagcaaacgacacatc 396
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 tccataaaccttttctgtaaggttttgcaagctgtgatcaagttaagcaaacgacacatc 1065
Query: 397 actttctatcttataattaagagagaaaatggctgccgaaggtaacacttatttctcttt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 actttctatcttataattaagagagaaaatggctgccgaaggtaacacttatttctcttt 1005
Query: 457 cccggaagaggaagagaaagtcttagccttctggaatgaaattgatgctttccatacttc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 cccggaagaggaagagaaagtcttagccttctggaatgaaattgatgctttccatacttc 945
Query: 517 tttgaagcttactgaagataagcctgaattctccttttttgatggtccttcattcgctac 576
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct: 944 tttgaagcttactgaagataagcctgaattctccttcttcgatggtcctccattcgctac 885
Query: 577 tggtacttcccacttttggtcacttgctagcgtccactgtgaaagatattgttcccagat 636
||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 884 tggtactccccac-tatggtcacttgctagcgtccactgtgaaagatatcgttccaagat 826
Query: 637 atgcttccatgacaggac 654
||||| ||||||||||||
Sbjct: 825 atgctaccatgacaggac 808
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7892
Number of Sequences: 1807
Number of extensions: 7892
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)