BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH03FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1257 0.0
>3x_Contig1730
Length = 17223
Score = 1257 bits (634), Expect = 0.0
Identities = 694/709 (97%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 86 taaacttcatttaatctattgagcaagttttcttccaattgtttgaataaccataaaatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8877 taaacttcatttaatctattgagcaagttttcttccaattgtttgaataaccataaaatc 8936
Query: 146 attgaattattgaatcaaagagaccactatatacagagtcatgttttccagagtatttgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8937 attgaattattgaatcaaagagaccactatatacagagtcatgttttccagagtatttgt 8996
Query: 206 tcgttctatggcagcttctgccaaggctggtgttaagcctccagtgcaattgttcggttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997 tcgttctatggcagcttctgccaaggctggtgttaagcctccagtgcaattgttcggttt 9056
Query: 266 ggatggtacctatgccactgcattgttcactgctgcctcaaagaccacttccgttgaagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9057 ggatggtacctatgccactgcattgttcactgctgcctcaaagaccacttccgttgaagc 9116
Query: 326 tgctgcttcctcattgaatgctttgaaggaaactgttgccaaggacaccaagttgaccag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9117 tgctgcttcctcattgaatgctttgaaggaaactgttgccaaggacaccaagttgaccag 9176
Query: 386 cattttggaaaacccagccttgtctgctgaagatagaaacattgttgttgacactttgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9177 cattttggaaaacccagccttgtctgctgaagatagaaacattgttgttgacactttgtc 9236
Query: 446 caagaaaatcaatttggatcaatccgttcaaaacttgttgaaggttttggctgaaaacaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9237 caagaaaatcaatttggatcaatccgttcaaaacttgttgaaggttttggctgaaaacaa 9296
Query: 506 cagattatccttgttagaacatgtcacttcccaattctccaagttgactgatgcttacca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297 cagattatccttgttagaacatgtcacttcccaattctccaagttgactgatgcttacca 9356
Query: 566 tggtcttgtgcaagcgactgttaccactgctcaacctttggactctaagttgttcaagag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9357 tggtcttgtgcaagcgactgttaccactgctcaacctttggactctaagttgttcaagag 9416
Query: 626 agtggaaaagggccttggctgctttctctttgtttggntagggtaagtcttttgaaattg 685
||||||||| |||||||||||||| ||||||| |||| |||||||||| ||||||||||
Sbjct: 9417 agtggaaaa-ggccttggctgcttcctctttggttggtaagggtaagtc-tttgaaattg 9474
Query: 686 gagaacgttgtcaagcctgaaatccaaggtggttttatcgttgaaatttcccaacagaac 745
||||||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||
Sbjct: 9475 gagaacgttgtcaagcctgaaatccaaggtggtttaatcgttgaagttt-ccgacagaac 9533
Query: 746 cgtcgatttgttaatttgcttccaaattcaaaaagttgaaccaagttct 794
||||||||||| || ||||||||| | |||| |||||||||||||||||
Sbjct: 9534 cgtcgatttgtcaa-ttgcttccagaatcaacaagttgaaccaagttct 9581
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9802
Number of Sequences: 1807
Number of extensions: 9802
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)