BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH03RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1156 0.0
>3x_Contig1705
Length = 16734
Score = 1156 bits (583), Expect = 0.0
Identities = 622/631 (98%), Gaps = 3/631 (0%)
Strand = Plus / Plus
Query: 50 taggtcaaaatgatagaggttatccaatactgatatttctacgaaattattatatgccct 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4235 taggtcaaaatgatagaggttatccaatactgatatttctacgaaattattatatgccct 4294
Query: 110 tacttatgttttgttagttttgaagaatccgtcaattcttcctttacccttagcaacctt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 tacttatgttttgttagttttgaagaatccgtcaattcttcctttacccttagcaacctt 4354
Query: 170 tggtttcacaactttagccttttgaataggttgtttctttacggtttttgtgccatttgg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 tggtttcacaactttagccttttgaataggttgtttctttacggtttttgtgccatttgg 4414
Query: 230 aatggctgtagacatagcagctttgataaggagctctctttccctttctgtttgtaatgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415 aatggctgtagacatagcagctttgataaggagctctctttccctttctgtttgtaatgt 4474
Query: 290 ttcgttcttgtacttgtcgtatgagtcgaaacattgtttgatgttaagatttgaagattc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4475 ttcgttcttgtacttgtcgtatgagtcgaaacattgtttgatgttaagatttgaagattc 4534
Query: 350 atgtctaattagatcctggtatgcgagttgtgggatcaaggaaactagaagattacacga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4535 atgtctaattagatcctggtatgcgagttgtgggatcaaggaaactagaagattacacga 4594
Query: 410 cattatgcatttcagagatgatgctatatcttcaggtagcgattttggtattttaagaga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4595 cattatgcatttcagagatgatgctatatcttcaggtagcgattttggtattttaagaga 4654
Query: 470 agtagggaagttgttgttgattttgatgactttcttcagtagccattctactatcatttg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4655 agtagggaagttgttgttgattttgatgactttcttcagtagccattctactatcatttg 4714
Query: 530 aggttcgatacgataatacttgtcaccagcttcttccactgtatgtgatattttcccgag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4715 aggttcgatacgataatacttgtcaccagcttcttccactgtatgtgatattttcccgag 4774
Query: 590 ac-actttcccat-atttttgaggtatcttcttccaattttcactgggataattcgttaa 647
|| |||||||||| ||||| |||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 4775 acaactttcccataattttggaggtatcttctcccaattttcactgtgattattcgttaa 4834
Query: 648 tttcttttggtaattagaaactagtataaaa 678
||||| |||||||| || |||||||||||||
Sbjct: 4835 tttctcttggtaatcag-aactagtataaaa 4864
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8249
Number of Sequences: 1807
Number of extensions: 8249
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)