BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH04FM1.SCF screened BAC_end
(1006 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1672 1120 0.0
>3x_Contig1672
Length = 13609
Score = 1120 bits (565), Expect = 0.0
Identities = 577/581 (99%)
Strand = Plus / Minus
Query: 88 gttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaagtctgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10390 gttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaagtctgc 10331
Query: 148 tgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacgtcgta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10330 tgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacgtcgta 10271
Query: 208 accttgttccttgtaataattgaaaggatgtagcgcttccacagcaaagacaccggtctt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10270 accttgttccttgtaataattgaaaggatgtagcgcttccacagcaaagacaccggtctt 10211
Query: 268 cgcaccatcagtaaagaatgcttcgttgtaacttgtcaatgcaattaaaaccctggtcat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10210 cgcaccatcagtaaagaatgcttcgttgtaacttgtcaatgcaattaaaaccctggtcat 10151
Query: 328 tttcagacggaattattatatgagttaatgactcttgtcaacctacgaagcacactcaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10150 tttcagacggaattattatatgagttaatgactcttgtcaacctacgaagcacactcaac 10091
Query: 388 ggagagagataataatgttcaggatcttgaatgtcaggttctttttagtattctattcat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10090 ggagagagataataatgttcaggatcttgaatgtcaggttctttttagtattctattcat 10031
Query: 448 tgttatattcttttatttttgttagataatacgtagatgtttcatattgaagtagtgaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10030 tgttatattcttttatttttgttagataatacgtagatgtttcatattgaagtagtgaac 9971
Query: 508 ttcctcaattccatgttattcatttgtgatactaactaatagctttggcaaggactagcc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9970 ttcctcaattccatgttattcatttgtgatactaactaatagctttggcaaggactagcc 9911
Query: 568 caaataatctggccttgacattagctgtctcatcccatacgattaatcttacatcggccc 627
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9910 caaataatctggcctcgacattagctgtctcatcccatacgattaatcttacatcggccc 9851
Query: 628 accaactaccagcattatgaaacctagttcaattaggtgcc 668
||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 9850 accaactaccagcatcatgaaacctagtacaataaggtgcc 9810
Score = 476 bits (240), Expect = e-134
Identities = 294/312 (94%)
Strand = Plus / Minus
Query: 88 gttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaagtctgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12173 gttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaagtctgc 12114
Query: 148 tgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacgtcgta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12113 tgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacgtcata 12054
Query: 208 accttgttccttgtaataattgaaaggatgtagcgcttccacagcaaagacaccggtctt 267
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 12053 accttgttccttgtaataattgaaagggtgtagcgcttccacaacaaagacaccggtctt 11994
Query: 268 cgcaccatcagtaaagaatgcttcgttgtaacttgtcaatgcaattaaaaccctggtcat 327
|| |||||||| | || | |||||||||| ||| |||||||||| |||| |||||||
Sbjct: 11993 cgtaccatcagcgtaaaacgtatcgttgtaacatgttaatgcaattagaaccttggtcat 11934
Query: 328 tttcagacggaattattatatgagttaatgactcttgtcaacctacgaagcacactcaac 387
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11933 tttcagacagaattattatatgagttaatgactcttgtcaacctacgaagcacactcaac 11874
Query: 388 ggagagagataa 399
|| || ||||||
Sbjct: 11873 ggggaaagataa 11862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7029
Number of Sequences: 1807
Number of extensions: 7029
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)