BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH04RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1326 0.0
>3x_Contig1805
Length = 19369
Score = 1326 bits (669), Expect = 0.0
Identities = 762/784 (97%), Gaps = 7/784 (0%)
Strand = Plus / Minus
Query: 47 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 3252
Query: 107 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 3192
Query: 167 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 3132
Query: 227 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3131 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 3072
Query: 287 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 3012
Query: 347 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 2952
Query: 407 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 2892
Query: 467 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 2832
Query: 527 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 2772
Query: 587 ttcttacgattcgtgaaactgtctacgaactcancgtttgttggctggttg-acag-aaa 644
| |||||||||||||||||||||||||||||| |||||| |||||||||| |||| |||
Sbjct: 2771 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacagaaaa 2712
Query: 645 aaacaccgatagcataataacttagttgaaaattgctttat-attcttacgagtacctg- 702
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 2711 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctga 2652
Query: 703 aaattcaagaaaagtaataacaaccttatcattctttattcctttcgcaatcataccatt 762
|||| ||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||| |
Sbjct: 2651 aaatccaagaaaagtagtaacaacctcatcattccttattccattcgcaatcatacca-t 2593
Query: 763 tttgatttttcaggaattaaaaatccaaaatggacttgacgggcccaagacgaaaaactg 822
||||| |||||| |||| |||||| |||||||||| |||| |||||||||||||||||||
Sbjct: 2592 tttga-ttttcaagaataaaaaatacaaaatggacatgac-ggcccaagacgaaaaactg 2535
Query: 823 gtcc 826
||||
Sbjct: 2534 gtcc 2531
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6756
Number of Sequences: 1807
Number of extensions: 6756
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)