BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH06RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1405 0.0
>3x_Contig1335
Length = 8696
Score = 1405 bits (709), Expect = 0.0
Identities = 779/797 (97%), Gaps = 4/797 (0%)
Strand = Plus / Minus
Query: 54 atacactggaaaacttcaaatctttggtacttccctatgccatcaactttggtttattcc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8564 atacactggaaaacttcaaatctttggtacttccctatgccatcaactttggtttattcc 8505
Query: 114 ttgcatttttattatacaatcgatcaattacattaggcgataaaagtaaccatgttgcag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8504 ttgcatttttattatacaatcgatcaattacattaggcgataaaagtaaccatgttgcag 8445
Query: 174 gattgcacatcgtacaatttttctattgcttgatgtttattgctttctttagcgtaccgg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8444 gattgcacatcgtacaatttttctattgcttgatgtttattgctttctttagcgtaccgg 8385
Query: 234 tatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtcatgaaccctgtaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8384 tatggttttcaaagcaagtcactctatcgtacttgatcaggtttgtcatgaaccctgtaa 8325
Query: 294 agtatctattggagttattggggattatgttgataatacggtacttcacagtggtacatc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8324 agtatctattggagttattggggattatgttgataatacggtacttcacagtggtacatc 8265
Query: 354 cattccttctagctgataatcgtcatatcaccttttacctattcaaaaaactgatcggaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8264 cattccttctagctgataatcgtcatatcaccttttacctattcaaaaaactgatcggaa 8205
Query: 414 gaagtagtttgttcaagtattgtgtgatggctccaatttatcatttctccgcgtatgtct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8204 gaagtagtttgttcaagtattgtgtgatggctccaatttatcatttctccgcgtatgtct 8145
Query: 474 accttgaagtaatgagacctagcacgatgatattccaccctatattgcctattgaaatta 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8144 accttgaagtaatgagacctagcacgatgatattccaccctatattgcctattgaaatta 8085
Query: 534 aaaacccaatcgatttaccaattcaattgacacatatttcgtggactgccttgattatgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8084 aaaacccaatcgatttaccaattcaattgacacatatttcgtggactgccttgattatgt 8025
Query: 594 gcacatttatgacggtggttccttctcccttgtttgaacctcgatactacatcttgccat 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8024 gcacatttatgacggtggttccttctcccttgtttgaacctcgatactacatcttgccat 7965
Query: 654 ttatattttggaggcttttcattacaatggcacctgaaccatttctgggtaatccaatag 713
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 7964 ttatattttggaggcttttcatcacaatggcacctgaaccattctggggtaatccaatag 7905
Query: 714 gtaaggtgactgggacgaaaagacac-tgtcttgatgtgcatggtttatgataattaatt 772
||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 7904 gtaaggtgactggaacgaaaagacacttgtctgaatgtgcatggtttatgataattaatt 7845
Query: 773 tgatcccgtatattattttcaaga-aattgatttaaaatggatat-tggaacttctgtac 830
||||| |||||||||||||||||| | ||||| |||||||| || || |||| ||||||
Sbjct: 7844 tgatcacgtatattattttcaagagatttgatataaaatgggaatctgaaactactgtac 7785
Query: 831 agcatat-atttggtaa 846
||||||| |||||||||
Sbjct: 7784 agcatatcatttggtaa 7768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6941
Number of Sequences: 1807
Number of extensions: 6941
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)