BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZH07FM1.SCF screened BAC_end
         (945 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig331                                                          928   0.0  

>3x_Contig331 
          Length = 1863

 Score =  928 bits (468), Expect = 0.0
 Identities = 583/608 (95%), Gaps = 10/608 (1%)
 Strand = Plus / Minus

                                                                       
Query: 88  tctgcaccatattgaaatcc-cactattgatagatcttgtatgttctgagagagatgtta 146
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgcaccatattgaaatccacactattgatagatcttgtatgttctgagagagatgtta 742

                                                                       
Query: 147 caactggattgtctatcgctgatgtcttattaatatcgtaaatcgcaacagacgttgaag 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caactggattgtctatcgctgatgtcttattaatatcgtaaatcgcaacagacgttgaag 682

                                                                       
Query: 207 taccacaaattgctacatagtttttgtgattgtaaaagccagctttaacatcagatatgg 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccacaaattgctacatagtttttgtgattgtaaaagccagctttaacatcagatatgg 622

                                                                       
Query: 267 ttgaaattttttttgttgttctccgtagtgtcgatgaagtgttcttcgtgatcccagtat 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaaattttttttgttgttctccgtagtgtcgatgaagtgttcttcgtgatcccagtat 562

                                                                       
Query: 327 ttgtcttcgctgtctgtaagaaatcatgtacattagttatcgtcttagaatcttcatcga 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtcttcgctgtctgtaagaaatcatgtacattagttatcgtcttagaatcttcatcga 502

                                                                       
Query: 387 aagtgtaaatacctaaatggctttttcctgctattatcaaggatctgctctccggtgaat 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgtaaatacctaaatggctttttcctgctattatcaaggatctgctctccggtgaat 442

                                                                       
Query: 447 tgattttatctatacttgagacttcctttttcgatactcagagagtatttagcgccgtgg 506
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 441 tgattttatctatacttgagacttcc-tttccgatactcagagagtatttagcgccgtgg 383

                                                                       
Query: 507 aaagttctacgtttgtcaaa-gaactttcagaaggccttcatcttgcatttgattctttt 565
           |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
Sbjct: 382 aaagttctacgtttgtcaaatgaactttcagaaggtctccatcttgcatttgattcttct 323

                                                                       
Query: 566 tcattaagagagctttcttggtccaacattttcccgtcccattaaaactgtaagtagtgc 625
           |||||||||||||| || |||||||||| |||||||| |||| ||||||| | | |||||
Sbjct: 322 tcattaagagagctctc-tggtccaaca-tttcccgtaccatcaaaactgaagggagtgc 265

                                                                       
Query: 626 ggcttttttggtttaatcttaggtgaatatccctaaagggtgaagtttccaaaacctggt 685
           ||| | | |||||||  |||||||| |||| |||||| ||||||| ||||||||||| ||
Sbjct: 264 ggc-tatctggtttatacttaggtg-atat-cctaaaaggtgaag-ttccaaaacct-gt 210

                   
Query: 686 gttgtact 693
           ||||||||
Sbjct: 209 gttgtact 202


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8741
Number of Sequences: 1807
Number of extensions: 8741
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)