BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH07RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 1277 0.0
>3x_Contig1467
Length = 7717
Score = 1277 bits (644), Expect = 0.0
Identities = 698/712 (98%), Gaps = 3/712 (0%)
Strand = Plus / Minus
Query: 46 ttatctacagtaaagcaaaatgggtatttctcgtgattctcgtcacaaaagagctgctac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 ttatctacagtaaagcaaaatgggtatttctcgtgattctcgtcacaaaagagctgctac 3145
Query: 106 cggtgctaaacgtgctcaattcagaaagaagagaaagttcgaattaggccgtcaagctgc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 cggtgctaaacgtgctcaattcagaaagaagagaaagttcgaattaggccgtcaagctgc 3085
Query: 166 caacaccaagatcggtactaagagaattcatcctgttagaaccagaggtggtaaccagaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 caacaccaagatcggtactaagagaattcatcctgttagaaccagaggtggtaaccagaa 3025
Query: 226 gttcagagctttgagaattgaaactggtaacttctcctgggcttccgaaggtgtcgctag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 gttcagagctttgagaattgaaactggtaacttctcctgggcttccgaaggtgtcgctag 2965
Query: 286 aaagaccagaatcactggtgtcgtctaccatccatccaacaatgaattggttagaactaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 aaagaccagaatcactggtgtcgtctaccatccatccaacaatgaattggttagaactaa 2905
Query: 346 cactttgaccaaggcagctatcgttcaaatcgatgctaccccattcagacaatggtacga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 cactttgaccaaggcagctatcgttcaaatcgatgctaccccattcagacaatggtacga 2845
Query: 406 atctcactacggtcaatctttgggtaagaagaagaacactaaggctgaagaagaaaccgc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 atctcactacggtcaatctttgggtaagaagaagaacactaaggctgaagaagaaaccgc 2785
Query: 466 caccacctctaagaacactgaaagaaagtgggctgccagagctgctgaagctaagatcga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 caccacctctaagaacactgaaagaaagtgggctgccagagctgctgaagctaagatcga 2725
Query: 526 acacgccgttgactctcaattcggtgctggtagattgtacgctgctatctcttccagacc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 acacgccgttgactctcaattcggtgctggtagattgtacgctgctatctcttccagacc 2665
Query: 586 aggtcaatccggtagatgtgatggttacatttttggaggtgaagatttgcctttctactt 645
||||||||||||||||||||||||||||||||| | ||||||||| ||| | ||||||||
Sbjct: 2664 aggtcaatccggtagatgtgatggttacattttggaaggtgaagaattggccttctactt 2605
Query: 646 gagaagattgactgcttagaaataagtcaacctctttcgcaaatt-acatatacgcccat 704
|||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||| ||
Sbjct: 2604 gagaagattgactgctaagaaataagtcaa-ctccttcgcaaattaacatatacgccaat 2546
Query: 705 ttatcaaaattccttatttaccgttattattacagccaaaaggttcttttgg 756
||||||||| |||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 2545 ttatcaaaactccttattaaccgttattatcacagcc-aaaggttcttttgg 2495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7896
Number of Sequences: 1807
Number of extensions: 7896
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)