BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH08FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1386 0.0
>3x_Contig1724
Length = 20938
Score = 1386 bits (699), Expect = 0.0
Identities = 758/771 (98%), Gaps = 5/771 (0%)
Strand = Plus / Minus
Query: 87 cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11077 cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 11018
Query: 147 gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11017 gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 10958
Query: 207 ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10957 ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 10898
Query: 267 tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10897 tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 10838
Query: 327 tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10837 tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 10778
Query: 387 tgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggacaccg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777 tgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggacaccg 10718
Query: 447 gacacaagagacaagagacaagagacaagagaaactaagggagggggaagaaaaacggta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10717 gacacaagagacaagagacaagagacaagagaaactaagggagggggaagaaaaacggta 10658
Query: 507 ttattttaccccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10657 ttattttaccccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatc 10598
Query: 567 actttgtaacattatgtattctctcttcctaaagtattttcaattacttacccttaattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10597 actttgtaacattatgtattctctcttcctaaagtattttcaattacttacccttaattt 10538
Query: 627 ttgagaggcctttttttcttttcatccgtcagatcaacgatcatagaatcagtttaatca 686
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10537 ttgagaggcctctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatca 10478
Query: 687 ataaaacttgcgtcaaactactcgtagaagcaaaggattggaatcg-ttacagatttcca 745
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 10477 ataaaacttgcgtcaaactactcgtagaagcaaaggatt-gaatcgtttacagatttcca 10419
Query: 746 gttccaaccgaattgtcccaatgtcttaaatgagacttcagtgctatgtaatggtgtatg 805
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 10418 g-tccaaccgaattgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatg 10360
Query: 806 ttatgtgtggtaagcatgaaattctaacccccattcttgattggtaattgg 856
|||||||||| |||||| |||||||||| ||||||||||||| |||||||
Sbjct: 10359 -tatgtgtggttagcatg-aattctaacctccattcttgattgttaattgg 10311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8106
Number of Sequences: 1807
Number of extensions: 8106
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)