BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH08RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1009 0.0
>3x_Contig1688
Length = 18058
Score = 1009 bits (509), Expect = 0.0
Identities = 576/593 (97%), Gaps = 4/593 (0%)
Strand = Plus / Minus
Query: 44 ctttgacacatcttcgacctctttgtaaattactgacaagatatcttgaaggaatatcaa 103
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 4123 ctttgacacatcttcgacctcaatg-aaattactgacaagatatcttgaaggaatatcaa 4065
Query: 104 aatcctgggttatggaagatcgaagtcaagttctgactgccgactgcaatgacatttttg 163
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4064 aatactgggttatggaagatcgaagtcaagttctgactgccgactgcaatgacatttttg 4005
Query: 164 attggattgtgacacaatatgacgaatcatcgttcagcggtgtggaagctttatatgagc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4004 attggattgtgacacaatatgacgaatcatcgttcagcggtgtggaagctttatatgagc 3945
Query: 224 tcgctcgttttatgactcttttattggaaaagtacaacctctccaatagttccatatctg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3944 tcgctcgttttatgactcttttattggaaaagtacaacctctccaatagttccatatctg 3885
Query: 284 gaggcaaacaaagagtgttcaagatactcagtggttgcattactaggttgccgaaatact 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 gaggcaaacaaagagtgttcaagatactcagtggttgcattactaggttgccgaaatact 3825
Query: 344 tgacgaacagggtagtatctctgctcggaacctatgtcaaaagggttggtgttactaatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3824 tgacgaacagggtagtatctctgctcggaacctatgtcaaaagggttggtgttactaatc 3765
Query: 404 aacgtatattattcaaagaactacttcagagattcaatcctcctcaaaagtcggttgaaa 463
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3764 aacgtatattattcaaagaactacttcagagattcaatcctcctcaagagtcggttgaaa 3705
Query: 464 ctgctgcatttttttcgttgacatgtacgaaattatcccttatcaatgaggtttatttgc 523
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3704 ctgctgcatttttttcgttgacatgtacgaaattatcccttatcaatgagttttatttgc 3645
Query: 524 tcaactctattttacatctgttagataacacaaacttctcttat-ttttcttttattgtg 582
|||||||||| |||||||||||||||||||||||||||||| || || |||| || |||
Sbjct: 3644 tcaactctatcttacatctgttagataacacaaacttctctcatcttctcttata-tgtt 3586
Query: 583 gaaaaaagtttggatacgaccccatctttttatggccctttgttctaaacaag 635
||||||||||||||||||| | || |||||||||| |||||||||||||||||
Sbjct: 3585 gaaaaaagtttggatacgatctcaactttttatgg-cctttgttctaaacaag 3534
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,913
Number of Sequences: 1807
Number of extensions: 10913
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)