BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH09FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1158 0.0
>3x_Contig1647
Length = 14353
Score = 1158 bits (584), Expect = 0.0
Identities = 617/628 (98%)
Strand = Plus / Plus
Query: 86 atgctgtttccgaaaaggctggtcaccaaacctctgctgaatcttggggtactggtcgtg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12505 atgctgtttccgaaaaggctggtcaccaaacctctgctgaatcttggggtactggtcgtg 12564
Query: 146 ctgttgcccgtattccacgtgttggtggtggtggtacccacagatccggtcaagctgctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12565 ctgttgcccgtattccacgtgttggtggtggtggtacccacagatccggtcaagctgctt 12624
Query: 206 tcggtaacatgtgtcgtggtggtcgtatgttcgctccaaccaagacctggagaaagtgga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12625 tcggtaacatgtgtcgtggtggtcgtatgttcgctccaaccaagacctggagaaagtgga 12684
Query: 266 acgttaaggttaaccaaaacgaaaagagatacgctactgcttctgctattgctgcctctg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12685 acgttaaggttaaccaaaacgaaaagagatacgctactgcttctgctattgctgcctctg 12744
Query: 326 ctgttccatctttggttttggccagaggtcacagagtcgaaaaggttccatccatcccat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12745 ctgttccatctttggttttggccagaggtcacagagtcgaaaaggttccatccatcccat 12804
Query: 386 tggttgtttccgacgacttgcaatccatccaaaagaccaaagaagctgttgctgctttga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12805 tggttgtttccgacgacttgcaatccatccaaaagaccaaagaagctgttgctgctttga 12864
Query: 446 aggctgttggtgctcactccgacgtcatcaaggtcgtcaagtccaagaagctaagagctg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12865 aggctgttggtgctcactccgacgtcatcaaggtcgtcaagtccaagaagctaagagctg 12924
Query: 506 gtaagggtaagtacagaaacagaagattcactcaaagaagaggtccatttgttgtctact 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 12925 gtaagggtaagtacagaaacagaagattcactcaaagaagaggtccattggttgtctact 12984
Query: 566 ccgaagacaacggtgttgtcaaggctttcagaaacgttccaggtgttgaaaccgctaacg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12985 ccgaagacaacggtgttgtcaaggctttcagaaacgttccaggtgttgaaaccgctaacg 13044
Query: 626 ttgcctctttaagtttgttgcaattggctccaggtgcttactttggtaaattcgttatct 685
||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct: 13045 ttgcctctttaggtttgttgcaattggctccaggtgctcacttgggtagattcgttatct 13104
Query: 686 tgacttaattccttttctccaaattgga 713
|||| ||| | ||||||||| |||||
Sbjct: 13105 ggactcaatccgctttctccaagttgga 13132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7637
Number of Sequences: 1807
Number of extensions: 7637
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)