BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH09RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1201 0.0
>3x_Contig1278
Length = 6932
Score = 1201 bits (606), Expect = 0.0
Identities = 623/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 48 agcgtagtataatgcataggcggatactgccagtggtcttgtaatagaattttatcagtg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 agcgtagtataatgcataggcggatactgccagtggtcttgtaatagaattttatcagtg 1584
Query: 108 gctttatctcagcgtagtgctatatagtatgacgccggtatttttagggttgtatctagg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 gctttatctcagcgtagtgctatatagtatgacgccggtatttttagggttgtatctagg 1524
Query: 168 gtagaagagggattgggaaaggaaattgtttctttctcataagactgtgggcccgattaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 gtagaagagggattgggaaaggaaattgtttctttctcataagactgtgggcccgattaa 1464
Query: 228 attgacactcaatccaaagtggctgtatactttatctcagtctcgaagtttgaacgggtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 attgacactcaatccaaagtggctgtatactttatctcagtctcgaagtttgaacgggtt 1404
Query: 288 gtaaaatacactttaaacctttatgcgtgttcagcgcgcatttttttgaaactttacccc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 gtaaaatacactttaaacctttatgcgtgttcagcgcgcatttttttgaaactttacccc 1344
Query: 348 ttcacacctaccgatatattcttattatcgaataacgatatatgtgcattaatatatata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 ttcacacctaccgatatattcttattatcgaataacgatatatgtgcattaatatatata 1284
Query: 408 tatatgggtaaagtatatgctatgatagtatcttaacgacctttgggttattgtagtgtc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1283 tatatgggtaaagtatatgctatgatagtatcttaacgacctttgggttattgtagtgtc 1224
Query: 468 tatgcccatatatacacctcacgagtaagcagttaccaagattgccttagttgttaatat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 tatgcccatatatacacctcacgagtaagcagttaccaagattgccttagttgttaatat 1164
Query: 528 cagtttatcaatcctttttccatgttggatgaacgtctggaatcagatgaaggagtaaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 cagtttatcaatcctttttccatgttggatgaacgtctggaatcagatgaaggagtaaag 1104
Query: 588 cctttagtgtgccattgtgggttgtcccaatgaaagaggctccatatttgagagatcagt 647
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 cctttagtgtgccattgt-ggttgtcccaatgaaagaggctccatatttgagagatcagt 1045
Query: 648 gcaagacccctttttgctctactttt 673
||| |||||| |||||||||||||||
Sbjct: 1044 gcaggacccc-ttttgctctactttt 1020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,300
Number of Sequences: 1807
Number of extensions: 10300
Number of successful extensions: 234
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)