BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH10FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1420 1061 0.0
>3x_Contig1420
Length = 8324
Score = 1061 bits (535), Expect = 0.0
Identities = 598/615 (97%), Gaps = 3/615 (0%)
Strand = Plus / Plus
Query: 88 ttacaccatcgtaaaagaggaaggtttcagcgctttgtaccgtggtgtttcattgactgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2745 ttacaccatcgtaaaagaggaaggtttcagcgctttgtaccgtggtgtttcattgactgc 2804
Query: 148 tgctagacaagccaccaaccaaggtgctaatttcaccgtttactctaaattaaaagaatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2805 tgctagacaagccaccaaccaaggtgctaatttcaccgtttactctaaattaaaagaatt 2864
Query: 208 cttgcaaggttatcataatcaagaaatgttgccaagttgggaaacctcattgattgggtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2865 cttgcaaggttatcataatcaagaaatgttgccaagttgggaaacctcattgattgggtt 2924
Query: 268 aatctcaggtgccattggtcccttctcaaatgcaccgttagataccatcaagacgagatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2925 aatctcaggtgccattggtcccttctcaaatgcaccgttagataccatcaagacgagatt 2984
Query: 328 gcaaaaggataaatctactaagaatatgtccggtctcaaaagaattaccatcattggtaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2985 gcaaaaggataaatctactaagaatatgtccggtctcaaaagaattaccatcattggtaa 3044
Query: 388 acaattgatccaagaagaaggtttccgtgccctatataaaggtatcaccccaagagtgat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3045 acaattgatccaagaagaaggtttccgtgccctatataaaggtatcaccccaagagtgat 3104
Query: 448 gcgtgtggctccaggtcaagctgtcactttcactgcttatgaattcattcgtaaagaatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3105 gcgtgtggctccaggtcaagctgtcactttcactgcttatgaattcattcgtaaagaatt 3164
Query: 508 ggagaagaccggtgtattttgaatcgatctaatttatggttctcaccatcatttcttttg 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 ggagaagaccggtgtattttgaatcgatctaatttatggttctcaccatcatttcttttc 3224
Query: 568 cttcaatcatgctcctactaccattttttcctttttcatttcagacttttcaatctttat 627
|||||||||||||||||||||||||| | ||| | ||||| |||||| |||||| | ||
Sbjct: 3225 cttcaatcatgctcctactaccatttctccctctctcattcaagacttctcaatcataat 3284
Query: 628 tattgatttttgattattgcacttacaattttgatttattcataaaggggtttttccaca 687
||| || |||||||||||||| ||| ||||||||| |||||||||||| | |||||||||
Sbjct: 3285 tataga-ttttgattattgca-ttagaattttgatatattcataaaggtg-ttttccaca 3341
Query: 688 aactaagagaatggt 702
|||||||||||||||
Sbjct: 3342 aactaagagaatggt 3356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9607
Number of Sequences: 1807
Number of extensions: 9607
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)