BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC30ZH10FM1.SCF screened BAC_end (957 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1420 1061 0.0 >3x_Contig1420 Length = 8324 Score = 1061 bits (535), Expect = 0.0 Identities = 598/615 (97%), Gaps = 3/615 (0%) Strand = Plus / Plus Query: 88 ttacaccatcgtaaaagaggaaggtttcagcgctttgtaccgtggtgtttcattgactgc 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2745 ttacaccatcgtaaaagaggaaggtttcagcgctttgtaccgtggtgtttcattgactgc 2804 Query: 148 tgctagacaagccaccaaccaaggtgctaatttcaccgtttactctaaattaaaagaatt 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2805 tgctagacaagccaccaaccaaggtgctaatttcaccgtttactctaaattaaaagaatt 2864 Query: 208 cttgcaaggttatcataatcaagaaatgttgccaagttgggaaacctcattgattgggtt 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2865 cttgcaaggttatcataatcaagaaatgttgccaagttgggaaacctcattgattgggtt 2924 Query: 268 aatctcaggtgccattggtcccttctcaaatgcaccgttagataccatcaagacgagatt 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2925 aatctcaggtgccattggtcccttctcaaatgcaccgttagataccatcaagacgagatt 2984 Query: 328 gcaaaaggataaatctactaagaatatgtccggtctcaaaagaattaccatcattggtaa 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2985 gcaaaaggataaatctactaagaatatgtccggtctcaaaagaattaccatcattggtaa 3044 Query: 388 acaattgatccaagaagaaggtttccgtgccctatataaaggtatcaccccaagagtgat 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3045 acaattgatccaagaagaaggtttccgtgccctatataaaggtatcaccccaagagtgat 3104 Query: 448 gcgtgtggctccaggtcaagctgtcactttcactgcttatgaattcattcgtaaagaatt 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3105 gcgtgtggctccaggtcaagctgtcactttcactgcttatgaattcattcgtaaagaatt 3164 Query: 508 ggagaagaccggtgtattttgaatcgatctaatttatggttctcaccatcatttcttttg 567 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3165 ggagaagaccggtgtattttgaatcgatctaatttatggttctcaccatcatttcttttc 3224 Query: 568 cttcaatcatgctcctactaccattttttcctttttcatttcagacttttcaatctttat 627 |||||||||||||||||||||||||| | ||| | ||||| |||||| |||||| | || Sbjct: 3225 cttcaatcatgctcctactaccatttctccctctctcattcaagacttctcaatcataat 3284 Query: 628 tattgatttttgattattgcacttacaattttgatttattcataaaggggtttttccaca 687 ||| || |||||||||||||| ||| ||||||||| |||||||||||| | ||||||||| Sbjct: 3285 tataga-ttttgattattgca-ttagaattttgatatattcataaaggtg-ttttccaca 3341 Query: 688 aactaagagaatggt 702 ||||||||||||||| Sbjct: 3342 aactaagagaatggt 3356 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9607 Number of Sequences: 1807 Number of extensions: 9607 Number of successful extensions: 111 Number of sequences better than 1.0e-20: 1 length of query: 957 length of database: 10,358,551 effective HSP length: 16 effective length of query: 941 effective length of database: 10,329,639 effective search space: 9720190299 effective search space used: 9720190299 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)