BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1334 1160 0.0
>3x_Contig1334
Length = 7302
Score = 1160 bits (585), Expect = 0.0
Identities = 623/633 (98%), Gaps = 2/633 (0%)
Strand = Plus / Plus
Query: 86 ccgatgtcaattctctaaatgtgcaggagggtattaccctcaatctatatagagaaaacg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3472 ccgatgtcaattctctaaatgtgcaggagggtattaccctcaatctatatagagaaaacg 3531
Query: 146 ccttaactgaattcaaatattgattccgcaaggccgttagcgcgtatgtattcttgctcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3532 ccttaactgaattcaaatattgattccgcaaggccgttagcgcgtatgtattcttgctcc 3591
Query: 206 cactgatcatattctgttggcaagtcgccactaattcccctgcgccagaacaaatcccca 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3592 cactgatcatatcctgttggcaagtcgccactaattcccctgcgccagaacaaatcccca 3651
Query: 266 tgcaaaacaagcatggcccaataatactcgtattcatgactgtacaaacacacctgcttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3652 tgcaaaacaagcatggcccaataatactcgtattcatgactgtacaaacacacctgcttg 3711
Query: 326 tatgtttcacagcagaaacccttgattagccatgaattgtcgagcatcgtagtcgcatca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3712 tatgtttcacagcagaaacccttgattagccatgaattgtcgagcatcgtagtcgcatca 3771
Query: 386 ctgatcgattggctaccatatttcacaagtatacctacaagagtcaggtaccaagatcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3772 ctgatcgattggctaccatatttcacaagtatacctacaagagtcaggtaccaagatcgt 3831
Query: 446 atattgaaaatgactgtttccgaagtatcatcatcatccacaaagagaacattatcatac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3832 atattgaaaatgactgtttccgaagtatcatcatcatccacaaagagaacattatcatac 3891
Query: 506 tgaaagcgtgggtcggatatcattttggtccgtattggttgtatgcactacggttttata 565
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3892 tgaaagcgtgggtcggatatcattttggtccgtattggttgtatgcactacgtttttata 3951
Query: 566 catattatacaatgttacttactagctggtgtctttttttctcagttccttttaggttaa 625
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3952 catattatacaatgttacttactagctggtgtctttttttctcagttcc-tttaggttaa 4010
Query: 626 ttaaagatttcctttatgctttgatgaggttgcttaatgacaagcacttttttcc-ctga 684
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct: 4011 ttaacgatttcctttatgctttgatgaggttgctcaatgacaagcactttattccactga 4070
Query: 685 gaggattggcattcttggccatgtaatttattg 717
|||||||||||| ||| |||||||||||||||
Sbjct: 4071 gaggattggcatctttgtccatgtaatttattg 4103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7399
Number of Sequences: 1807
Number of extensions: 7399
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)