BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH11RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1251 0.0
>3x_Contig1731
Length = 24233
Score = 1251 bits (631), Expect = 0.0
Identities = 753/788 (95%), Gaps = 5/788 (0%)
Strand = Plus / Minus
Query: 51 gcttaaccaatgatagattgtaatttcaaatgaacaacaataatgtgtgcagccagaaaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20773 gcttaaccaatgatagattgtaatttcaaatgaacaacaataatgtgtgcagccagaaaa 20714
Query: 111 aaaatcaatgaagaaaaacaaacattacaattttgaaggggtgacaaagcatggtctgct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20713 aaaatcaatgaagaaaaacaaacattacaattttgaaggggtgacaaagcatggtctgct 20654
Query: 171 acactggtatttcatagtatcaacaatcaacaatctaactaaagctaggctcctcangtt 230
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 20653 acactggtagttcatagtatcaacaatcaacaatctaactaaagctaggctcc-cagtct 20595
Query: 231 cttagcaaagcacagtgacggaaaaacgaaggaaaaaaaataaagtcacatacccttata 290
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20594 cagagcaaagcacagtgacggaaaaacgaaggaaaaaaaataaagtcacatacccttata 20535
Query: 291 ctttggcaaagctcctgattttgaagcggccttggattttggggacacagcggtcgattt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534 ctttggcaaagctcctgattttgaagcggccttggattttggggacacagcggtcgattt 20475
Query: 351 cttagtagtcttaacaactttggcagccatttctgatagtattgtataatggtagaggaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474 cttagtagtcttaacaactttggcagccatttctgatagtattgtataatggtagaggaa 20415
Query: 411 taggacagttacttataatatgactggatgctaaaatctttctttcaatattaaatcaca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20414 taggacagttacttataatatgactggatgctaaaatctttctttcaatattaaatcaca 20355
Query: 471 ataatatttttttgctctcttaacttttgtttataattgcagataacgtctcaatttgcg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20354 ataatatttttttgctctcttaacttttgtttataattgcagataacgtctcaatttgcg 20295
Query: 531 gccagaaaaacttctaaatttcactcaatcaaactttggtaacaaataaacagaatagct 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20294 gccagaaaaacttctaaatttcactcaatcaaactttggtaacaaataaacagaatagct 20235
Query: 591 caaacaatanggttcaaacgatgatatatagcctctctctttctctttaaaacttcttaa 650
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 20234 caaacaatagggttcaaacgatgatatatag-ctctctctttctctttaaaacttcttaa 20176
Query: 651 ctgttgttgttgtaaa-aacatggaatgtatctcttaagcttttttgtttggtttcttaa 709
|||||||||||||||| |||||||||||||||||| | ||||||||||||| ||| || |
Sbjct: 20175 ctgttgttgttgtaaataacatggaatgtatctctaaggcttttttgtttgtttttttta 20116
Query: 710 tatttccatttcaattcaggttttgttttgttttggatatttcgactcttttttattgtc 769
|||||||| |||| ||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 20115 tatttcca-ttcagttcgtgttttgttttgtttt-gatttttcgactcttttttattgtc 20058
Query: 770 tattcgtgggaatggttaaaaactcccngttcaaaaataaaaccccaatttttgggtcta 829
||| |||||| || ||||||| || | |||||||| || | ||||||||||||||
Sbjct: 20057 tatctgtgggatgtgtaaaaaactaccgatcaaaaaataagacgcgaatttttgggtcta 19998
Query: 830 ctatgcac 837
||||||||
Sbjct: 19997 ctatgcac 19990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,504
Number of Sequences: 1807
Number of extensions: 11504
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)