BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH12FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1271 0.0
>3x_Contig1781
Length = 20717
Score = 1271 bits (641), Expect = 0.0
Identities = 735/761 (96%), Gaps = 4/761 (0%)
Strand = Plus / Minus
Query: 85 cacttgttctgtaaattccacttctcgaatgacaccattccctccacggaatttgcccac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18058 cacttgttctgtaaattccacttctcgaatgacaccattccctccacggaatttgcccac 17999
Query: 145 accgccagacgcctttcttattgcaaactgacgcaagattacaggataatgtctttcgaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17998 accgccagacgcctttcttattgcaaactgacgcaagattacaggataatgtctttcgaa 17939
Query: 205 gatctccacttttttcattcttgtgttggtcatgttggtatgaacggcactggtcccttc 264
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17938 gatctccacatcggtcattcttgtgttggtcatgttggtatgaacggcactggtcccttc 17879
Query: 265 ccacgtcggatcgcctttggcatttttgcttctccagtagaagtttcctgcaccgtgccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17878 ccacgtcggatcgcctttggcatttttgcttctccagtagaagtttcctgcaccgtgccc 17819
Query: 325 gccgcaaatggtttcatagtatccaaatccttcgttaccgaaggtgaagttgttacaatc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17818 gccgcaaatggtttcatagtatccaaatccttcgttaccgaaggtgaagttgttacaatc 17759
Query: 385 gccttgggaatcagctgacacttgtaaagtctttaggatcacatcggtgactctttgtga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17758 gccttgggaatcagctgacacttgtaaagtctttaggatcacatcggtgactctttgtga 17699
Query: 445 agtcatcacattgccgcccaccacagccgcaccttgtcttggcgatagtacgctaccctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17698 agtcatcacattgccgcccaccacagccgcaccttgtcttggcgatagtacgctaccctt 17639
Query: 505 tgggattatcacatcgactgggtccagacagccttggttcaatgggatctcttcatccac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17638 tgggattatcacatcgactgggtccagacagccttggttcaatgggatctcttcatccac 17579
Query: 565 gagacaccgcaacacgtacaacgtcgcagaatacgttatcgcttctggtgcgttcaagtt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17578 gagacaccgcaacacgtacaacgtcgcagaatacgttatcgcttctggtgcgttcaagtt 17519
Query: 625 cccatacacttgaggtgttgttcctgtgaagtcgaacgtatatttgtcgtttcttgggtc 684
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17518 cccatacacttgaggtgttgttcctgtgaagtcgaacgtatatttgtcgttccttgggtc 17459
Query: 685 caatgtcacttttcagtatatttttggtaccgtcgtccatgaagtcatgtgaatgaaatt 744
|||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct: 17458 caatgtcactttcaagtata-tcttggtaccgtcgtccatgaagtcatgtgactgaaatt 17400
Query: 745 ggcacacggaa-cgatgtaccgggggttcatctgtaatgatactttgttcaaagtttttc 803
||||||||||| |||||| | | |||||||||||||||||| |||||||||| | |||
Sbjct: 17399 ggcacacggaatcgatgtcaccgcggttcatctgtaatgataacttgttcaaag-tcttc 17341
Query: 804 ttcccggtattgttggcattcgaatggtattgcatacatgt 844
||| | |||| | |||||||||| ||| || ||||||||||
Sbjct: 17340 ttcaccgtatcgctggcattcgattgg-atcgcatacatgt 17301
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5493
Number of Sequences: 1807
Number of extensions: 5493
Number of successful extensions: 21
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)