BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZH12RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1409 0.0
>3x_Contig1807
Length = 66587
Score = 1409 bits (711), Expect = 0.0
Identities = 755/767 (98%), Gaps = 2/767 (0%)
Strand = Plus / Plus
Query: 49 gcttgaagaaactgcttggagctcaattcactaccgtataaatactttgcaatgcaggta 108
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 41445 gcttgaagaaactgcttggagcacaattcactaccgtataaatactttgcaatgcaggta 41504
Query: 109 aacggtaaatcactgaccaattgtagaggatcgatatcggaaatctgttcagtatcaagg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41505 aacggtaaatcactgaccaattgtagaggatcgatatcggaaatctgttcagtatcaagg 41564
Query: 169 tctttaatccactcagaaatataatcgatcattactgggaagttttcgacggtttgtttt 228
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 41565 tctttaatccactcagaaatataatcgatcattactgggaagttttcgacggct-gcctt 41623
Query: 229 atgtgtgaaaaaggaatcaaaaactttcctcatgcttaaccactctgaaccgttctggaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41624 atgtgtgaaaaaggaatcaaaaactttcctcatgcttaaccactctgaaccgttctggaa 41683
Query: 289 acctaggcattcgccaagaagagccactagaaacgctccagccccaaagctatctagctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41684 acctaggcattcgccaagaagagccactagaaacgctccagccccaaagctatctagctt 41743
Query: 349 actatggtttttactgttggatttataatattccatcagttgctttggagttgttaagac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41744 actatggtttttactgttggatttataatattccatcagttgctttggagttgttaagac 41803
Query: 409 aatctccttataggtgccgcttctctgcaaatacaggtcaccacactggtctctgttttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41804 aatctccttataggtgccgcttctctgcaaatacaggtcaccacactggtctctgttttt 41863
Query: 469 gatagacaagcttttgccgtccaagaatttggttcttgcgcagttttctttgttgtaagg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41864 gatagacaagcttttgccgtccaagaatttggttcttgcgcagttttctttgttgtaagg 41923
Query: 529 caacgtcttgcgctcatacccaaaaggagcggcgacggtctgtcccaaattattaaatcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41924 caacgtcttgcgctcatacccaaaaggagcggcgacggtctgtcccaaattattaaatcc 41983
Query: 589 atatgcagctcgccattctttgagcaggtataaaacgacgaaaagaactggcgtaaaata 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41984 atatgcagctcgccattctttgagcaggtataaaacgacgaaaagaactggcgtaaaata 42043
Query: 649 tacaaaagccatccagttcttcttgattaatgggattaatatatcagctaacatttcttt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42044 tacaaaagccatccagttcttcttgattaatgggattaatatatcagctaacatttcttt 42103
Query: 709 cctggtgcgcttcaattgtctgttccttgagtatcgttagggctagaaaaaaagacacct 768
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 42104 cctgttgcgcttcaattgtctgttctttgagtatcgttagggctagaaaaaaagacacct 42163
Query: 769 gaaggttttttcattagcattagaagagacggttttcgatttaaaaa 815
||||| |||| ||||||||| ||||||||||||| |||||| |||||
Sbjct: 42164 gaagg-ttttccattagcataagaagagacggttatcgattaaaaaa 42209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6606
Number of Sequences: 1807
Number of extensions: 6606
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)