BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA01RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 890 0.0
>3x_Contig1295
Length = 7117
Score = 890 bits (449), Expect = 0.0
Identities = 519/541 (95%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 46 cttgacgttggtcaccgtttccatgtatgtatgtttcgaaaatggaattactgtcatggg 105
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 286 cttgacgttggtcaccgtttccaag-atgtatgtttcgaaaatggaattactgtcatggg 344
Query: 106 tatgcaaggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tatgcaaggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcat 404
Query: 166 catcaccgaagacgatgtctccaccattgtggaaagatttaccaagtctgttgatgatat 225
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 405 catcaccgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatat 464
Query: 226 gaccgttctactaaatgctgaaggccatttctgagaatgcttcagctgtgctaagtattc 285
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 465 gaccgttctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattc 524
Query: 286 taacgactatataacggcacatacgtatacgtattgtgccacctcttctctgtacttgtt 345
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 525 taacgactatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgtt 584
Query: 346 ctttaaaactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctttaaaactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttc 644
Query: 406 ctaatatttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatatta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctaatatttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatatta 704
Query: 466 ttaacaaagtgatcgatactaatatatcatcatgaaattcaaaaatataatgccgattta 525
|||||||||||||||| ||||| |||||| || |||| ||||||||| || ||||| |||
Sbjct: 705 ttaacaaagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagtta 764
Query: 526 ttggtcctacattaacatcaacgtgggaagattttcttagggactcacatatttcggccc 585
|||||||||||||||||||||| | ||||||||||||| ||||||| ||| ||||||
Sbjct: 765 agggtcctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggccc 824
Query: 586 a 586
|
Sbjct: 825 a 825
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6190
Number of Sequences: 1807
Number of extensions: 6190
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)