BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA02RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1503 0.0
>3x_Contig1807
Length = 66587
Score = 1503 bits (758), Expect = 0.0
Identities = 835/854 (97%), Gaps = 5/854 (0%)
Strand = Plus / Plus
Query: 50 aagaaactgcttggagcacaattcactaccgtataaatactttgcaatgcaggtaaacgg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41450 aagaaactgcttggagcacaattcactaccgtataaatactttgcaatgcaggtaaacgg 41509
Query: 110 taaatcactgaccaattgtagaggatcgatatcggaaatctgttcagtatcaaggtcttt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41510 taaatcactgaccaattgtagaggatcgatatcggaaatctgttcagtatcaaggtcttt 41569
Query: 170 aatccactcagaaatataatcgatcattactgggaagttttcgacggctgccttatgtgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41570 aatccactcagaaatataatcgatcattactgggaagttttcgacggctgccttatgtgt 41629
Query: 230 gaaaaaggaatcaaaaactttcctcatgcttaaccactctgaaccgttctggaaacctag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41630 gaaaaaggaatcaaaaactttcctcatgcttaaccactctgaaccgttctggaaacctag 41689
Query: 290 gcattcgccaagaagagccactagaaacgctccagccccaaagctatctagcttactatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41690 gcattcgccaagaagagccactagaaacgctccagccccaaagctatctagcttactatg 41749
Query: 350 gtttttactgttggatttataatattccatcagttgctttggagttgttaagacaatctc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41750 gtttttactgttggatttataatattccatcagttgctttggagttgttaagacaatctc 41809
Query: 410 cttataggtgccgcttctctgcaaatacaggtcaccacactggtctctgtttttgataga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41810 cttataggtgccgcttctctgcaaatacaggtcaccacactggtctctgtttttgataga 41869
Query: 470 caagcttttgccgtccaagaatttggttcttgcgcagttttctttgttgtaaggcaacgt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41870 caagcttttgccgtccaagaatttggttcttgcgcagttttctttgttgtaaggcaacgt 41929
Query: 530 cttgcgctcatacccaaaaggagcggcgacggtctgtcccaaattattaaatccatatgc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41930 cttgcgctcatacccaaaaggagcggcgacggtctgtcccaaattattaaatccatatgc 41989
Query: 590 agctcgccattctttgagcaggtataaaacgacgaatagaactggcgtaaaatatacaaa 649
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 41990 agctcgccattctttgagcaggtataaaacgacgaaaagaactggcgtaaaatatacaaa 42049
Query: 650 agccatccagttcttcttgattaatgggattaatatatcagctaacatttctttcctgtt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42050 agccatccagttcttcttgattaatgggattaatatatcagctaacatttctttcctgtt 42109
Query: 710 gcgcttcaatggtctggtctttgagtatcgttagggctag-aaaaaagacacctgaa-gt 767
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 42110 gcgcttcaattgtctgttctttgagtatcgttagggctagaaaaaaagacacctgaaggt 42169
Query: 768 tttccattagcataagaagaaacgtttttcgattaaaaaagcccagtatttatagccctt 827
|||||||||||||||||||| ||| || |||||||||||||| |||||||||||| ||||
Sbjct: 42170 tttccattagcataagaagagacggttatcgattaaaaaagcacagtatttatag-cctt 42228
Query: 828 catcctacgacaggtttgataatttgaagagctaagaaaaatagcgtggtgggctatatt 887
||||||||||||| | |||||| |||||||||||| |||||||| |||| ||||| |||
Sbjct: 42229 catcctacgacagttatgataa-ttgaagagctaaagaaaatagc-tggttggctagatt 42286
Query: 888 ttagcttccctatg 901
||||||||| ||||
Sbjct: 42287 ttagcttccatatg 42300
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5988
Number of Sequences: 1807
Number of extensions: 5988
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)