BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA03RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig602 1618 0.0
>3x_Contig602
Length = 2648
Score = 1618 bits (816), Expect = 0.0
Identities = 852/863 (98%), Gaps = 1/863 (0%)
Strand = Plus / Plus
Query: 50 cgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaat 757
Query: 110 accagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccata 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 accagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccata 817
Query: 170 ccatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagcc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ccatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagcc 877
Query: 230 aactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctgg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 aactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctgg 937
Query: 290 taacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 taacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaaa 997
Query: 350 tccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtgt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtgt 1057
Query: 410 cattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgccat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 cattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgccat 1117
Query: 470 gtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 gtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcga 1177
Query: 530 acagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagatag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 acagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagatag 1237
Query: 590 attattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaactc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 attattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaactc 1297
Query: 650 tcttcaaccaatgaaatattaagtctgtaggtacctattgggaacagttagatcagttnt 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1298 tcttcaaccaatgaaatattaagtctgtaggtacctattgggaacagttagatcagtttt 1357
Query: 710 ttattttaatttgtattatcatacgtattgggaagatatattcaatttcagagcattgat 769
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1358 ttattttaatttgtattatcatacgtattgggaagaaatattcaatttcagagcattgat 1417
Query: 770 agtgtcgaccagttcccttctaacttttacggaccgtacagaaaacaatggtacacttac 829
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1418 agtgtcgaccagttcccttctaacttttacggaccgtacagaaacaaatggtacacttac 1477
Query: 830 tatacccatctttcgtacttggccgtcattattttcgaccacttcatccagtaagaaggt 889
|| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1478 taaacccatcttccgtacatggccgtcattattttcgaccacttcatccagt-agaaggt 1536
Query: 890 tttgcttgcaatcaatagcgatg 912
|| ||||||||||||||||||
Sbjct: 1537 ttgctttgcaatcaatagcgatg 1559
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6192
Number of Sequences: 1807
Number of extensions: 6192
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)