BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA04FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1045 0.0
>3x_Contig1683
Length = 16378
Score = 1045 bits (527), Expect = 0.0
Identities = 601/622 (96%), Gaps = 3/622 (0%)
Strand = Plus / Plus
Query: 84 tgatattatgtctatatcttatatataaatatcatcgcgactactcctttaattgaaatt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9487 tgatattatgtctatatcttatatataaatatcatcgcgactactcctttaattgaaatt 9546
Query: 144 tatgtttgttcctagtttctcagcaggaggaagattttctttcattattctataaggctc 203
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9547 tatgtttgttcctagtttctcagcaggaggaagattttctttcattagtctataaggctc 9606
Query: 204 acctttccaccgctagtccaatatcttctatactctcccttccgagtagagaaaaaaaga 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9607 acctttccaccgctagtccaatatcttctatactctcccttccgagtagagaaaaaaaga 9666
Query: 264 ataaataatgataacatatcatctttacagcttatattgatatataggaaagatcaatag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9667 ataaataatgataacatatcatctttacagcttatattgatatataggaaagatcaatag 9726
Query: 324 aaagtagtttaaaataacaactgtgtggacatcgttctacaaggttcataaatggcatta 383
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9727 aaagtagtttaaaataacaactgtgtggacatcgttctacaaggttcagaaatggcatta 9786
Query: 384 ttcaatgataataatgtgagaatggaaaataacataaaaattgggttgttaaaaggaata 443
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9787 ttcaatgagaataatgtgagaatggaaaataacataaaaattgggttgttaaaaggaata 9846
Query: 444 taaatgggaatgaaaaaaacaatttcgaaccattacaccctatcgttttcttaatttcaa 503
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9847 taaatgggaatgaaaaaaacaatttcgaaccattacaccctagcgttttcttaatttcaa 9906
Query: 504 tgtggccacttgatcttctaatttctttacttcggcttgaatcttttccaaatcaccgtt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9907 tgtggccacttgatcttctaatttctttacttcggcttgaatcttttccaaatcaccgtt 9966
Query: 564 cattttaattctttcattcacaatggtttggtgccactgtcttgattctttgttctttcn 623
|| |||||||||||||||||||||| |||| | |||||||| ||| ||||||||| |||
Sbjct: 9967 cagtttaattctttcattcacaatgttttgttcccactgtc-tgaatctttgttc-ttcg 10024
Query: 624 gccttaactggatcaatgaattattttttttattgccttttcttcttctttgaacttggg 683
||||||||| ||||| |||| || |||||||| ||| |||||||||||||||||||| ||
Sbjct: 10025 gccttaacttgatcagtgaagta-tttttttagtgcgttttcttcttctttgaactttgg 10083
Query: 684 attattggataattttcttgct 705
||||| |||||||||||||||
Sbjct: 10084 attatgtgataattttcttgct 10105
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,403
Number of Sequences: 1807
Number of extensions: 11403
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)