BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA04RM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1258 955 0.0
>3x_Contig1258
Length = 6899
Score = 955 bits (482), Expect = 0.0
Identities = 552/570 (96%), Gaps = 4/570 (0%)
Strand = Plus / Minus
Query: 41 ctttagctcttcggctgc-acatttttgaatagcaagaaatcgcaaaacgcgaat-ataa 98
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5459 ctttagctcttcggctgccacatttttgaatagcaagaaatcgcaaaacgcgaatcataa 5400
Query: 99 taaattgaaaagcgcaactgaagtatcagatatattggaatctgaatttgctactcaaaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5399 taaattgaaaagcgcaactgaagtatcagatatattggaatctgaatttgctactcaaaa 5340
Query: 159 atcatggaacgggatcgttgcaaaaactacaactcaaatgtctggtattactgctcttat 218
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5339 atcatggaacgggagcgttgcaaaaactacaactcaaatgtctggtattactgctcttat 5280
Query: 219 gaatgaaactaaaaaactggaaaatactattaccccaccttggtcatcaaggcgattaat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5279 gaatgaaactaaaaaactggaaaatactattaccccaccttggtcatcaaggcgattaat 5220
Query: 279 tcatcaattatacgaacagattgttgcttcatgaaatatcctactaacgatggcaatttt 338
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 5219 tcatcaattatacgaacagagtgttgcttcaggaaatatcctactaacgatggcaatttt 5160
Query: 339 gttattatttcaagatatgtgtcaacttgttgatacagatacagttaagaattctatagc 398
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 5159 gttattatttcaagatatgtttcaacttgttgatacagagacagttaagaattctatagc 5100
Query: 399 ggaatgtaccgaattattgcaccggtacgatctatttgagattgcagcggagttgatgaa 458
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5099 ggaatttaccgaattattgcaccggtacgagctatttgagattgcagcggagttgatgaa 5040
Query: 459 aaactgtccttacgatgatatttctagttcaagtgctggcttttcctccattcaggtatt 518
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5039 aaactgtccttacgaggatatttctagttcaagtgctggcttttcctccattcagttatt 4980
Query: 519 ctgggatagatgcaatagacctttatttaacgaatcttccaatgagaaaataagtcaaag 578
||| |||| |||||||| ||||||| |||||||||||||||| |||||||||| ||||||
Sbjct: 4979 ctgtgataaatgcaataaacctttagttaacgaatcttccaaggagaaaataa-tcaaag 4921
Query: 579 aaagacttggaaggaaattcaagtgctatg 608
|||||||| |||||||||||||||||||||
Sbjct: 4920 aaagactt-gaaggaaattcaagtgctatg 4892
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8465
Number of Sequences: 1807
Number of extensions: 8465
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)