BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZA05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1408 1271 0.0
>3x_Contig1408
Length = 6607
Score = 1271 bits (641), Expect = 0.0
Identities = 774/802 (96%), Gaps = 16/802 (1%)
Strand = Plus / Minus
Query: 88 taactgccagagtaattccccctcatttctccgaagatgaaccagtagatactagaattt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taactgccagagtaattccccctcatttctccgaagatgaaccagtagatactagaattt 743
Query: 148 atgaacgatggaaagagtatttcgttgtagctagagggacgggaaacccggatgctccag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgaacgatggaaagagtatttcgttgtagctagagggacgggaaacccggatgctccag 683
Query: 208 taaggctacaactttacacttcaagaaaaattaaaccaatagtaacaaaggatagaaaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taaggctacaactttacacttcaagaaaaattaaaccaatagtaacaaaggatagaaaac 623
Query: 268 catggcattgcaagattcagtttgatttagataagaaatgccttgttgaattttataatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catggcattgcaagattcagtttgatttagataagaaatgccttgttgaattttataatt 563
Query: 328 ctttggacaaaagtatttgcattgtcaaacaagatgacctatt-aacacaa--gaaatga 384
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 562 ctttggacaaaagtatttgcattgtcaaacaagatgacctattaaacacaaagaaaatga 503
Query: 385 ggtttgcggat-aatgc-aaaaacg-aaaacagc-aacatcgaagaa---acaattttcc 437
||||||||||| ||||| ||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 502 ggtttgcggataaatgcaaaaaacgaaaaacagcaaacatcgaagaaaacaaaattttcc 443
Query: 438 cctttg-aaaattttcatattccgatgtgat-aatctattatcatctagtaggtggttgg 495
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 cctttgaaaaattttcatattccgatgtgataaatctattatcatctagtaggtggttgg 383
Query: 496 tatttttgagatccagcattggtcctgcagc-acaaccttgtgacattgacatccatatt 554
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 tatttttgagatccagcattggtcctgcagcaacaaccttgtgacattgacatccatatt 323
Query: 555 ccaatagtaaatttatcactaaatgtagatctcccagaaataataagaaggaaattagca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccaatagtaaatttatcactaaatgtagatctcccagaaataataagaaggaaattagca 263
Query: 615 aagaaggcggcagatgaggaggaagtgatgaaaatattccaactagaaaatggataccgt 674
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagaaggcggcagaagaggaggaagtgatgaaaatattccaactagaaaatggataccgt 203
Query: 675 gtagcacaacttccaatattaagatatttgaagctagttatacgtgagacgcttatacaa 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtagcacaacttccaatattaagatatttgaagctagttatacgtgagacgcttatacaa 143
Query: 735 cttgggatatttacatgaaggttaaaaaaggggatgcttccaatatactaatgggactat 794
||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 142 ctt-ggatatttacatg-aggttaaaaaatgggatgcttccaatatactaatgggactat 85
Query: 795 gttggaaacattaccatttgatggaatggtcttacgtcaatcaaacggttttgttgtacg 854
|||||||||||||| || ||| ||||||||||||| ||||||||| | |||||||||||
Sbjct: 84 gttggaaacattacgataggattgaatggtcttacggcaatcaaactgatttgttgtacg 25
Query: 855 gaaacatttgttttgaaaaaat 876
| |||||||||||||| |||||
Sbjct: 24 g-aacatttgttttgagaaaat 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7846
Number of Sequences: 1807
Number of extensions: 7846
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)